Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops5g00460 ATGAAAGGTAGTAACCTTCTCAGAAACCTCTCCTTCCACACGCGCCATCTTAGTCTCCCTCCCTTCAATCGCAACCTTCCCTCTCTCTCTTCACCTACCTACTTCTCTTCTCGTAGTGACCCACATAATCTTCCACAGACCCAGAAGAAACAGGAACCCCTCGATGTTGAGGAAATCAACAACGAAGCTCATCCAGAAAAGAATCCTTTTTCTGAGGAAAAATGGGAAAGAATAATAGATATTATAGGGTCGCCAGATTTTCTTCGTGATGATATATCTCAATTTGATTGGCTACGTAAATTGCGTAAGGAGAAACAAGGAGCAAGAACTACCAGTTATGAGTTTGACCAATATCTTAACCATAATTTGGTATTTAATCCCCTCCTTCAGTTCCCCCATGATCAAAAAGCTCTTAAAAATGCAAACTTTAGCTTAATTTGGTGCAGAAAAGTTGGTGGGGGTTTTGACCTTTGGACTGGGAACTTCACTACCAAACAGAGATATCAAGGAAACATGGCTAATTCTGAAAATGATGAGCAGCCGATGCTGTCAGAAACAAATGCAAAACCTTATGATGAACCCTCTGATTCTAAATTCAGAAGGCTTGTAACTAGGACACAAAGTGCGTCAACAATCTCTATAGCTATGAGCTCCATGGACTCATATGAGAGAGAAAGTAGTCTCGTGGGACATACTGGTCCACTTCAGAGCAAGAGAAAAGCACCCTTTATGCAGATGAGTGGTCCACTAAATACTACCCCTGGAACTGGGAATCTTTTGCAGCGGCATGTTGTTGGAATAGGAAACAAAGTGGAGGAGGGAAAGACAGAAAATTTTGCTACTTTCAGCAGCACAGGTTCAAATTACTGGAATGACAACAGCTATGACAGAAAAAATGAACACTTACTGAGGTCTGGGCAACTGGGAATGTGTAATGATCCTTATTGCACTACTTGCCCTACATACTTCAATGCTTCTCAGCAAAGAAGTCGAAAACCTTCGACTATATTTGATCCCAAGTTCCACAATGCTCTTTATGGGGATGCCAAGGGTTTTGCAAGAAAACTTTTTTCTTTCTGCTCTTCATATGTTCCTGGAGTTATGAACCCTCATGCTAAAGTCGTTCAACAATGGAACCAGTTTTTTGCCATTTTTTGCTTGATTGCTATTTTTGTGGATCCATTATTTTTCTTCTTACTCTATGTGCAGCAGGATTATAAATGTATTGTAATCAACTGGAATATGACAACGGCACTTGTTTTACTTAGAAGCATAAATGATATTGTCTATTTCCTTAACATTCTTCTACAGTTTAGGTTGGCTTATGTTTCTCCTGAATCAACAGTGGTTGGTGCTGGAGATTTAGTTGACCAGCCAAAGAAAATTGCTCTTCATTACTTGAAGGGTTATTTCTTTATTGACTTATTTGTGGTATTTCCTCTTCCTCAGATAATGATATTATTTGTCCTGCCAAATTCCTTGGGTGGAGCAAACCATGCTAAGAATGTTCTGCGGGCAGCAATCTTAGTGCAGTATATTCCCAAGTTATTCAGGATTCTACCACTGCTAATTGGCCAATCTCCAACGGGATTCATATTTGAGTCAGCCCGGGCAAATTTTATTATAAATCTTCTCATTTTTATGCTTGCTAGCCATGTTGTTGGTTCTTGCTGGTACCTCTTTGGTCTACAGAGGGTTAATCTATGTTTGCGAAAAGCCTGCCTGAACTCTAATATTACTGGATGCATGAAATTCATTGATTGTGGACATGGCCGTAATGGAAACAATCAGCCTGACCTAACATCGAACCAATGGAACAACAATACAGATGCCATTAATTGTTTGTTTCCCCCTTCTGACGGTGGTTTTGATTATGGGATCTATAAGGGTGCTGTACCGCTAACTATGGAAACTAACGTGATCAACAAATATGTGTATTCTCTTTTTTGGGGATTCCAGCAAATCAGTACTCTAGCTGGTAATCAAGAGCCTAGCTACTTTGTGTGGGAAGTCCTTTTTACTATGTCCATCATTGGATCGGGACTCTTGCTTTTTGCAATTCTCATTGGAAATATACAGAATTTTCTACAGGCTCTTGGACGGAGGAAGCTAGAAATGCAACTTAGAGGCCGTGATGTTGAGCAATGGATGAGCCATCGGCGTTTACCAGAAGATCTAAGAAGGAGAGTAAGACAGGCTGAACGGTATAATTGGGCTGCAACAAGGGGTGTGAATGAAGAAGTGCTTATGGAGAATCTGCCAGAAGATCTGCAGAGAGACATAAGACGTCACCTCTTCAAATTTGTTAAGAAAATTCGAATTTTTTCCCTGATGGATGAGCCTATCTTAGATGCCATATGTGAGAGACTAAGACAAAAGACATACATCAAAGGAAGTAGAATTTTGAGTCAGGGTGGTCTGGTAGAGAAGATGGTATTCGTGGTGCGTGGCAAATTGGAGAGCATTGGAGATGATGGAACTAGAATTCCCTTATCTGAAGGGGATGCTTGTGGTGAAGAACTTCTAACATGGTATCTTGAACATTCTTCTGTCAGTACAGATGGTAGAAAAGTAAGGCTTCCAGGACAGAGGTTGGTTAGCACCAGGACAATAAGGTGCTTAACAAATGTGGAGGTATTTTCACTCTCTGCTGCAGACCTTGAAGAAGTCACAATCCTTTTCACAAGATTCTTGCGGAGTCCACGTGTTCAAGGAGCCCTAAGGTATGAATCACCTTATTGGAGATCCCTTGCAGCAAACCGCATTCAAGTTGCATGGAGATACAGAAAGAAACGTCTATGTCGTGTTAGTTCCTCACTATCAAACTAA 2829 0.4079 MKGSNLLRNLSFHTRHLSLPPFNRNLPSLSSPTYFSSRSDPHNLPQTQKKQEPLDVEEINNEAHPEKNPFSEEKWERIIDIIGSPDFLRDDISQFDWLRKLRKEKQGARTTSYEFDQYLNHNLVFNPLLQFPHDQKALKNANFSLIWCRKVGGGFDLWTGNFTTKQRYQGNMANSENDEQPMLSETNAKPYDEPSDSKFRRLVTRTQSASTISIAMSSMDSYERESSLVGHTGPLQSKRKAPFMQMSGPLNTTPGTGNLLQRHVVGIGNKVEEGKTENFATFSSTGSNYWNDNSYDRKNEHLLRSGQLGMCNDPYCTTCPTYFNASQQRSRKPSTIFDPKFHNALYGDAKGFARKLFSFCSSYVPGVMNPHAKVVQQWNQFFAIFCLIAIFVDPLFFFLLYVQQDYKCIVINWNMTTALVLLRSINDIVYFLNILLQFRLAYVSPESTVVGAGDLVDQPKKIALHYLKGYFFIDLFVVFPLPQIMILFVLPNSLGGANHAKNVLRAAILVQYIPKLFRILPLLIGQSPTGFIFESARANFIINLLIFMLASHVVGSCWYLFGLQRVNLCLRKACLNSNITGCMKFIDCGHGRNGNNQPDLTSNQWNNNTDAINCLFPPSDGGFDYGIYKGAVPLTMETNVINKYVYSLFWGFQQISTLAGNQEPSYFVWEVLFTMSIIGSGLLLFAILIGNIQNFLQALGRRKLEMQLRGRDVEQWMSHRRLPEDLRRRVRQAERYNWAATRGVNEEVLMENLPEDLQRDIRRHLFKFVKKIRIFSLMDEPILDAICERLRQKTYIKGSRILSQGGLVEKMVFVVRGKLESIGDDGTRIPLSEGDACGEELLTWYLEHSSVSTDGRKVRLPGQRLVSTRTIRCLTNVEVFSLSAADLEEVTILFTRFLRSPRVQGALRYESPYWRSLAANRIQVAWRYRKKRLCRVSSSLSN* 943
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops5g00460 942 MobiDBLite consensus disorder prediction 30 69 - -
Rops5g00460 942 CDD CAP_ED 774 890 IPR000595 -
Rops5g00460 942 SUPERFAMILY cAMP-binding domain-like 702 891 IPR018490 -
Rops5g00460 942 Gene3D - 370 699 - -
Rops5g00460 942 ProSiteProfiles cAMP/cGMP binding motif profile. 774 842 IPR000595 -
Rops5g00460 942 Gene3D Jelly Rolls 772 896 IPR014710 -
Rops5g00460 942 MobiDBLite consensus disorder prediction 173 195 - -
Rops5g00460 942 SMART cnmp_10 774 909 IPR000595 -
Rops5g00460 942 Pfam Ion transport protein 379 701 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Rops5g00460 942 MobiDBLite consensus disorder prediction 51 69 - -
Rops5g00460 942 SUPERFAMILY Voltage-gated potassium channels 373 702 - -
Rops5g00460 942 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 311 932 - -
Rops5g00460 942 Gene3D Helix hairpin bin 702 766 - -
Rops5g00460 942 MobiDBLite consensus disorder prediction 30 50 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops5g00460 Rops-Chr5 7888127 7913894 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops5g00460 173 852 Ion Channels AT3G17700 60.320 0.0 814
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops5g00460 K05391 - gmx:100795427 1321.61
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops5g00460 5 7888127 7913894 Rops5g00460 5 7888127 7913894 ECH