Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops5g00456 ATGGCTGGTTTTGAGAAAGATGAGGTGCCAATGCGGTCAGATATTCATCCCACACTATCAAATGAACCTGCTGATTCTAAATTCTGGAGGCTTATACCTAGGACAAGGAGTGTATCAATTTCTATTCCCATGGAGCCATGTGAAAGAGATACTAATCTTGTGGGACACACTGGCCCCCTTCGGATTCAAAGAAAAATTCCATTTAATGAAATGAGTGGTCCATTATACATTACCCATAGACCTGGCCGGCAGAATATAGTAGCACCAGCGAACAAAGCAGTGGAAAGTATGACAGAAAAGTTTCCTTCATTCTGTGGCACAGGTGAAAATGATTTGCAGAACAACTATGCTGGCAAAAATGAACATTTAGTAAGGTCTGGTCCACTGGGAATGTGTAATGATCCGTATTGTACAACTTGCCCAACTTACTTCAAGGCTACTCAACAAGGGAACTCAAAACCTTCGGACATGTTCAAACCTAAGCTTCATAATGCCCTTTATAGGGAGGCCAAGGATTGGGCAAGAAGACTTTCTGCTTTCTTGATTCCACATGTTCCTAGAGTTATGAATCCTCATACTAAACTTGTACAACAGTGGAATAAATTTTTTGCAATTTGTTGCTTGGGGGCAATTTTTGTGGATCCATTATTTTTCTTCTTGCTCTCTGTGCATAAGGAAGATAAATGTATTGTTATAAACCCGACTATGACAACTATGCTTATTTTACTTCGAAGCTTGAACGATTTTGTACACTTCCTAAACGTTATTCTTCAGTTTAGGTTGGCTTATGTGGCTCCTGAGTCTAGGGTGGTTGGTGCGGGGGAGTTAGTTGACCATCCCAAGAAAATAGCTCTTCACTATCTTCAGACATATTTTCTTTTTGACTTATTGGTTGTACTTCCTCTTCCTCAGATATGCATATTATTTGTCATACCAAAACACTTGGCGGCATCAAGAGTAAACTATGCAAAGAATCTCGTGTGTGCTGTGGTACTTGTTCAGTATATTCCCAGATTGTGTAGGTTTCTCCCTATGCTAATTTCTCCGAACGGATTCATATTTGAGTCAGCATGGGCAAGTTTCTTTATAAATCTTTGTACCTTTATGCTATCTGGCCATATTGTTGGGTCATGGTGGTACATGTTCGGGTTGCAGAGGGTCATTCAATGTCTGCGAAAGCACAACAATACTGCTTGTTTTACTGAAGATGGTTTTGAGTATGGGATCTATCTTAAAGCTGTCAACCTTACTGCAGATCATAATGTGTTCACTAGATATGTATATTCATCATTTTGGGGATTCCAGCAAATTAGTTCTCTAGCTAGCAATTTAACCCCAAGCTATTTTGTGTCGGAAGTCCTTTTTACCTCGGCGATCATAGGAGTGGGACTCTTGCTTTTTGCTCTTCTCATTGGGAATATACAGAACTTTCTTCAGGCTCTTGGACGCAGGAGGCTAGAAATGTCACTTAGACAACGGGATGTTGAGCAATGGATGAGCCATAGGCGCTTAGCAGAAGATCTGAGAAGGAGAGTGCGACAGGCTGAGCGTTATAACTGGGCTGCAACAAGAGGGGTGAATGAAGAAATGCTTCTGGAGAATTTACCAGAAGACCTCCAGAGGGACATCAGACGACATCTCTTTAACTTGGTTAAGAAAGTTCGAATTTTTGCCTTGTTGGATGAGCATATCTTGGATGCCATCTGTGAGAGACTAAGACAAAAAACATATATCAAAGGAAGCAAAATTTTGTATGAAGGTGGTCTAGTAGAGAAGATGGTTTTTATTGTGCGTGGAAAATTGGAGAGCTTTGGTGAAGATGACATTAGAGTTCCCCTGTCTGAAGGAAGTGTTTGTGGTGAAGAGCTTCTGACATGGTGTCTTGCACATCCTTCAGGAAACAAAGGTGGTGGAAAAACAAGGGTTCCAAGACAAAGGTTGGTTAGCAACAGGACAGTGTTGTGCTTAACGAATGTGGAGGCATTTTCCCTTAGAGCAGCAGACCTTGAAGAAGTTACCAGCCTTTTTGCAAGATTCTTAAGGAGTCCCGGTGTTCAAGGAGCCATAAGGTATGAATCACCATACTGGAGAAGCTTTGCAGCAACAAGCATCCAAGTTGCATGGAGATATAGAAAGAAATGTCTTAGTCGTGCTAACACTCCACAATCAAATGAAACTTCAAGGTTTTAG 2190 0.4114 MAGFEKDEVPMRSDIHPTLSNEPADSKFWRLIPRTRSVSISIPMEPCERDTNLVGHTGPLRIQRKIPFNEMSGPLYITHRPGRQNIVAPANKAVESMTEKFPSFCGTGENDLQNNYAGKNEHLVRSGPLGMCNDPYCTTCPTYFKATQQGNSKPSDMFKPKLHNALYREAKDWARRLSAFLIPHVPRVMNPHTKLVQQWNKFFAICCLGAIFVDPLFFFLLSVHKEDKCIVINPTMTTMLILLRSLNDFVHFLNVILQFRLAYVAPESRVVGAGELVDHPKKIALHYLQTYFLFDLLVVLPLPQICILFVIPKHLAASRVNYAKNLVCAVVLVQYIPRLCRFLPMLISPNGFIFESAWASFFINLCTFMLSGHIVGSWWYMFGLQRVIQCLRKHNNTACFTEDGFEYGIYLKAVNLTADHNVFTRYVYSSFWGFQQISSLASNLTPSYFVSEVLFTSAIIGVGLLLFALLIGNIQNFLQALGRRRLEMSLRQRDVEQWMSHRRLAEDLRRRVRQAERYNWAATRGVNEEMLLENLPEDLQRDIRRHLFNLVKKVRIFALLDEHILDAICERLRQKTYIKGSKILYEGGLVEKMVFIVRGKLESFGEDDIRVPLSEGSVCGEELLTWCLAHPSGNKGGGKTRVPRQRLVSNRTVLCLTNVEAFSLRAADLEEVTSLFARFLRSPGVQGAIRYESPYWRSFAATSIQVAWRYRKKCLSRANTPQSNETSRF* 730
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops5g00456 729 Pfam Ion transport protein 199 484 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Rops5g00456 729 SUPERFAMILY Voltage-gated potassium channels 191 484 - -
Rops5g00456 729 ProSiteProfiles cAMP/cGMP binding motif profile. 556 631 IPR000595 -
Rops5g00456 729 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 132 717 - -
Rops5g00456 729 Gene3D Helix hairpin bin 483 548 - -
Rops5g00456 729 SUPERFAMILY cAMP-binding domain-like 484 677 IPR018490 -
Rops5g00456 729 Gene3D - 187 481 - -
Rops5g00456 729 Gene3D Jelly Rolls 554 678 IPR014710 -
Rops5g00456 729 SMART cnmp_10 556 691 IPR000595 -
Rops5g00456 729 CDD CAP_ED 556 672 IPR000595 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops5g00456 Rops-Chr5 7794153 7809261 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops5g00456 5 636 Ion Channels AT3G17700 57.355 0.0 731
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops5g00456 K05391 - gmx:100795955 1160.59