LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Rops5g00449	ATGAGTGCTTCGACGAGGAAGAAGGTTCAGAGGAAGTGCAAGATCAGAGGCTACAATCTCAAAGTAGATGCTCTCGACGAGATCCTCTCCTTTGTTTCTCGCTTCGACGGCTCCGATGAAGAAGAAGCCATCGATCTACTCCTCGATCAACTCGAACACGAATCACTGAAATCTACTATTATCGAAAAGGAACCGGTGCACCGCGTGGTGAGCCTGCTATTGGAGGCTGAGGCGGCGGTGGAGGAAAGCTCTGATGTTTCCACAGCTTCCGCCATTCGCGTCGTTGATGCTTTCCTGATCCCAAAGTTTAAATACGATGCTATCAGAAAGCAGTTCTACGAGCATACAGGCAGCTTACCTATTCATGGGGACGCATCAGCAAAAGCAGCTCTTTACAGGGATAGGTTTCTGTTGTTGTTCCAGAGGCTCTCTCGTGACCAGCATTTTTCAAAGCCTGCGTTTCATTCTGAATTATCACATTTTGGGAGCTGTGAGATATCTCCTATTCAATCTTTGGTTGGGCAGACAGGATTCTTTACAGAGAACACCATAGTTGTGGCTGAAGGCGAGATGCTCGTGGAGGGTATTTTTCAGGTTTTAACATGTGGGTTTCCTCCATTGGAGGATAGAGATAAGTCACTTAAACAATTTGCAGGGCATGACTTTTTTGGTGGTGGTACTTTTACAAAAGAGGAAACGATCAGACTGGCAGAGATGGAGAAAAGAGCAATCAATGACATGTTTGTTATACTATCTGATATTTGGCTAGACAACGAGGAGGTTTTGAGAAAGCTAGAGACTGTTCTGGATGGTTTTGAGAGTGTGGAAGTGGTTCCTTCCTTGTTTGTTTTCATGGGAAACTTCTCTTCTTACCCATGTAACCTTTCATTTCATTCTTATTCGAGCCTCAGGTTGCAGTTTGGCAAGCTAGGGCAAATGATTGCTGCCCATCCACGGCTAAAAGAGCACAGTCGATTTCTTTTTATTCCGGGTCCTGATGATGCGGGTCCTTCAACAGTTCTTCCGAGGTGTGCCCTACCAAAATATTTAACTGAGGAGCTCCAAAAGCATATTCCCAATGCCATATTTGCAAGCAACCCCTGCAGGATCAAATTTTATACCCAAGAAATTGTATTTTTCCGCCAGGATCTGCTGTATAGAATGCGTCGTTCTTGTTTAATGCCGCCTTCCACGGAAGAAACTGATGATCTTTTTCAGCATCTTGTTGCTACATTAACCCATCAGAGTCATCTCTGTCCACTCCCTCTAACTGTACAACCCATCATCTGGAATTATGACCATTGCCTTTATCTTTATCCAACTCCGCACACGATAGTCTTAGGAGACAGAAGTCAGCAAAAGGCATTCAAGTACACAGGAATCACTTGTTTTAATACTGGTTCCTTCTCGATTGACAGCACATTTGTGGCGTACCGTCCTTGCACTCAGGAAGTTGAATTGTCAGCCTTGTAA	1473	0.4453	MSASTRKKVQRKCKIRGYNLKVDALDEILSFVSRFDGSDEEEAIDLLLDQLEHESLKSTIIEKEPVHRVVSLLLEAEAAVEESSDVSTASAIRVVDAFLIPKFKYDAIRKQFYEHTGSLPIHGDASAKAALYRDRFLLLFQRLSRDQHFSKPAFHSELSHFGSCEISPIQSLVGQTGFFTENTIVVAEGEMLVEGIFQVLTCGFPPLEDRDKSLKQFAGHDFFGGGTFTKEETIRLAEMEKRAINDMFVILSDIWLDNEEVLRKLETVLDGFESVEVVPSLFVFMGNFSSYPCNLSFHSYSSLRLQFGKLGQMIAAHPRLKEHSRFLFIPGPDDAGPSTVLPRCALPKYLTEELQKHIPNAIFASNPCRIKFYTQEIVFFRQDLLYRMRRSCLMPPSTEETDDLFQHLVATLTHQSHLCPLPLTVQPIIWNYDHCLYLYPTPHTIVLGDRSQQKAFKYTGITCFNTGSFSIDSTFVAYRPCTQEVELSAL*	491

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Rops5g00449	490	PIRSF	DNA_pol_epsilon_2	173	490	IPR016266	GO:0003677\|GO:0006261\|GO:0008622
	Rops5g00449	490	PIRSF	DNA_pol_epsilon_2	1	176	IPR016266	GO:0003677\|GO:0006261\|GO:0008622
	Rops5g00449	490	Gene3D	-	2	71	-	-
	Rops5g00449	490	Pfam	DNA polymerase alpha/epsilon subunit B	248	453	IPR007185	GO:0003677\|GO:0006260
	Rops5g00449	490	PANTHER	DNA POLYMERASE EPSILON SUBUNIT B	175	490	IPR016266	GO:0003677\|GO:0006261\|GO:0008622

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Rops5g00449	16	447	Core DNA Replication Machinery Family	AT5G22110	66.311	0.0	639

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Rops5g00449	K02325		-	gmx:100784116	824.313