Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops5g00423 ATGTTAGCCAATAACTTATCTCCATCATCAGTTCCCACTTCTGAACCCTTCTCCTGTGCTGAGAATGGCACTACTGCCACCAATAAAAGGAAGAGAAGGCCTGCAGGAACACCAGATCCAGATGCAGAGGTGGTGTCTCTCTCACCAAAGACTTTGTTGGAATCAGATCGTTATGTTTGTGAGATCTGCAACCAAGGATTCCAGAGGGACCAGAACTTGCAGATGCATAGGAGGAGGCACAAGGTGCCATGGAAGCTTTTGAAGAGGGAGACACCAGTGGTGAGGAAGAGAGTGTTTGTGTGTCCTGAACCTACTTGTTTGCACCATGACCCTTGTCATGCTTTGGGTGATCTTGTTGGAATAAAGAAGCATTTCAGAAGGAAACACAGTAATCACAAACAATGGGTCTGTGAGAGATGCTCTAAAGGTTATGCAGTGCAGTCTGATTACAAAGCACATCTCAAAACTTGTGGCACCAGAGGTCACTCTTGTGATTGTGGCCGAGTTTTCTCAAGGGTGGAGAGCTTTATTGAGCACCAAGATGCTTGTAACATGGGGAGGCTCCGCACAGAATCTCAACCACTGCAACCACCACCAGCATGCTTATCTAGAACTGCTTCAAGTCCAAGCCCATCAAGTGAAACCAACTTCACCACCACCAGAGGTCCATGGCAAGCAACAAGACTTCATGTAAGGCCAACAAAGCCAACAACAGAACCTACAATATTCATGAACCCTACTGCTATCACCACTGCTGAAACTTCATCCAAGAACATTAAACTCCACCCCAATTTGGAACTTCAACTCTCCACCACCACCAACACCAACAACAGCATCATCACCAATGCCAACATGTCAAACCTCATTGATGTAGCATCACTATCATCACCTAAGAGAGATGAGAACATCAACCATTCCACCCAGTTGCAGCTCTCAATTGGGTCATCAGATATCAGTGAGAAAAATGAATCAAACAATAGAAACTCATCACCAAAGGAAAGCACCAACAGTAATGAGAAGCCAATTGGTGCAGGCATGGCTTTGTTGAGGGTTCAAGAACAAGCAAGGGAACACTTGAGGATAGCCATGGCTGAGAAAGCTTATGCTGAAGAAGCAAGGAAACAAGCAAAGAAGCAAATTGAACTTGCGGAACAAGAGTTCACAAACGCAAAGAGAATCAGGCAACAAGCACAAGCTGAACTTGACAAAGCCTATGCCTTGAAAGAACATGCAATGAAACAAGTCAATTCCACCATGCTTCAAATCACTTGCCATGCTTGCAAACAACAATTCCAAGCAAGAAACTCAGCCCCAGATGAGAACTCTTTCGTGTTAAGCTACATGTCTTCAGCAATAACCACAGAAGGTGGCGAAGTAGAAAACGATAATGGAAAAGAACATGGCAAAACAACTAACTCTTAG 1422 0.4451 MLANNLSPSSVPTSEPFSCAENGTTATNKRKRRPAGTPDPDAEVVSLSPKTLLESDRYVCEICNQGFQRDQNLQMHRRRHKVPWKLLKRETPVVRKRVFVCPEPTCLHHDPCHALGDLVGIKKHFRRKHSNHKQWVCERCSKGYAVQSDYKAHLKTCGTRGHSCDCGRVFSRVESFIEHQDACNMGRLRTESQPLQPPPACLSRTASSPSPSSETNFTTTRGPWQATRLHVRPTKPTTEPTIFMNPTAITTAETSSKNIKLHPNLELQLSTTTNTNNSIITNANMSNLIDVASLSSPKRDENINHSTQLQLSIGSSDISEKNESNNRNSSPKESTNSNEKPIGAGMALLRVQEQAREHLRIAMAEKAYAEEARKQAKKQIELAEQEFTNAKRIRQQAQAELDKAYALKEHAMKQVNSTMLQITCHACKQQFQARNSAPDENSFVLSYMSSAITTEGGEVENDNGKEHGKTTNS* 474
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops5g00423 473 SMART c2h2final6 135 162 IPR013087 -
Rops5g00423 473 SMART c2h2final6 58 80 IPR013087 -
Rops5g00423 473 SMART c2h2final6 99 129 IPR013087 -
Rops5g00423 473 MobiDBLite consensus disorder prediction 308 342 - -
Rops5g00423 473 MobiDBLite consensus disorder prediction 459 473 - -
Rops5g00423 473 ProSitePatterns Zinc finger C2H2 type domain signature. 60 80 IPR013087 -
Rops5g00423 473 Coils Coil 359 414 - -
Rops5g00423 473 ProSiteProfiles Zinc finger C2H2 type domain profile. 58 80 IPR013087 -
Rops5g00423 473 Gene3D Classic Zinc Finger 36 98 - -
Rops5g00423 473 FunFam protein indeterminate-domain 12-like 37 105 - -
Rops5g00423 473 SUPERFAMILY beta-beta-alpha zinc fingers 55 81 IPR036236 -
Rops5g00423 473 Pfam Zinc finger, C2H2 type 58 80 IPR013087 -
Rops5g00423 473 MobiDBLite consensus disorder prediction 308 341 - -
Rops5g00423 473 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 18 428 IPR031140 -
Rops5g00423 473 Gene3D Classic Zinc Finger 120 195 - -
Rops5g00423 473 MobiDBLite consensus disorder prediction 1 45 - -
Rops5g00423 473 MobiDBLite consensus disorder prediction 190 223 - -
Rops5g00423 473 MobiDBLite consensus disorder prediction 1 25 - -
Rops5g00423 473 MobiDBLite consensus disorder prediction 454 473 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops5g00423 Rops-Chr5 7277217 7280305 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops5g00423 21 461 C2H2 Transcription Factor Family AT2G01940 53.057 1.92e-145 422
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Rops5g00423 zf-C2H2 0.0045 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops5g00423 K25871 - gmx:100785333 730.324
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops2g00015 2 456408 459392 Rops5g00423 5 7277217 7280305 PCT