Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops5g00422 ATGGATGGTGATAATGGTCTTAACATACGTAATTGGGGTTACTATGATGAACCTGCTACTTCATTTAAGAGTCATTTGGGGCTGCAGCTAATGTCTTCCATGCCAGAAAAGCCTCTGCTTGGAGGGCGCAATGCTGCAGTTTTAGGTGGCACTAATGGTGCATTTCACCATAGGGACATTGGTATGCCCCAAGCTGCACCATACCCTATGGATTATTTGAGAGATGCATGGATTAGTAATCAGCGAGAGAAGTACATGAACATGATACCTACAAACCCGAATTACGGTGGTATTCCGGTGGAGACATCTTCGGCACATCATATTCAAATGATTCCACCACCTGAAATGGTGAAGGAAGAAATGCCAATGGAAGAGGAGGCACCTGTTGTTGAGAAGGCGGCGAACGATGCTAGTAAGAAAAGGCAGGGGGCAAAGGTGCCTAAATCCCCCAAGGCGAAGAAGCCAAAGAGGGGCCCTCGTGTGCCAAAGGATGGGAACACTCCTTCAGTTCAAAGAGCAAGGGTTCCAAAGAAAACTACTGAAATTGTTATAAATGGGATTGATATGGATATTTCTAGTATTCCAATTCCTGTTTGTTCATGCACTGGGACACCTCAACAGTGTTATAGATGGGGATCTGGTGGGTGGCAATCTGCTTGCTGCACAACAGGTATGTCAGTGTATCCTTTGCCTATGAGTACAAAGCGGCGTGGTGCTAGGATAGCTGGAAGGAAAATGAGTATAGGAGCATTTAGGAAAGTTTTAGAGAAACTTGCAGCTGAGGGTTATAACTTTTCTAATCCAATTGATTTGAGGACTTATTGGGCAAAACATGGCACCAACAAGTTTGTCACTATCAGGTAG 864 0.4468 MDGDNGLNIRNWGYYDEPATSFKSHLGLQLMSSMPEKPLLGGRNAAVLGGTNGAFHHRDIGMPQAAPYPMDYLRDAWISNQREKYMNMIPTNPNYGGIPVETSSAHHIQMIPPPEMVKEEMPMEEEAPVVEKAANDASKKRQGAKVPKSPKAKKPKRGPRVPKDGNTPSVQRARVPKKTTEIVINGIDMDISSIPIPVCSCTGTPQQCYRWGSGGWQSACCTTGMSVYPLPMSTKRRGARIAGRKMSIGAFRKVLEKLAAEGYNFSNPIDLRTYWAKHGTNKFVTIR* 288
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops5g00422 287 MobiDBLite consensus disorder prediction 144 158 - -
Rops5g00422 287 MobiDBLite consensus disorder prediction 120 177 - -
Rops5g00422 287 PANTHER - 1 287 IPR010409 -
Rops5g00422 287 MobiDBLite consensus disorder prediction 120 143 - -
Rops5g00422 287 SMART GAGA_bind_2 1 287 IPR010409 -
Rops5g00422 287 Pfam GAGA binding protein-like family 1 287 IPR010409 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops5g00422 Rops-Chr5 7264789 7266425 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops5g00422 1 287 BBR or BPC Transcription factor family AT2G01930 50.836 8.93e-95 279
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF BBR-BPC Rops5g00422 GAGA_bind 1.7e-108 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops5g00422 - - gmx:100784091 460.685