Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops5g00421 ATGGAAGATAACTCATCAAACTGTGCTTATAGAGAGTGCTTGAGAAACCATGCAGCCAGCCTTGGCAGTTACGCCACCGACGGTTGCGGCGAGTTCACCGTCGATGACGACGGAACCCTCCAATGCGCTGCCTGTGGTTGTCACCGGAATTTCCACCGGAAAGTGACGTACCCACCATGGAGTCATGTTAGGGATCCCAATGAGACCAACACCGGCGGTGTCACCACCGGTGAGATGATGGAATATTCCGGCGGCGGAGGAGGAGGAGAAGGGAAGAAGAGGTTCAGGACGAAGTTCACGGCGGAGCAAAAGGAGAAGATGTTGGGTTTTGCTGAGAAGTTAGGGTGGAAGCTTCAAAGGAAGGATCTGGAAGATGAGATAGAGAGGTTTTGCAAAAGTGTTGGGGTTAGTAGGCAAGTTTTTAAGGTTTGGATGCATAATCATAAGAACTCTTCTTCATCTTCTTCTGCTTCTACTACTGGGAATGCCTCCTCTCTCACCCATTAA 507 0.499 MEDNSSNCAYRECLRNHAASLGSYATDGCGEFTVDDDGTLQCAACGCHRNFHRKVTYPPWSHVRDPNETNTGGVTTGEMMEYSGGGGGGEGKKRFRTKFTAEQKEKMLGFAEKLGWKLQRKDLEDEIERFCKSVGVSRQVFKVWMHNHKNSSSSSSASTTGNASSLTH* 169
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops5g00421 168 FunFam Zinc-finger homeodomain protein 2 80 154 - -
Rops5g00421 168 MobiDBLite consensus disorder prediction 148 168 - -
Rops5g00421 168 Pfam ZF-HD protein dimerisation region 8 56 IPR006456 -
Rops5g00421 168 NCBIfam homeobox domain, ZF-HD class 92 150 IPR006455 -
Rops5g00421 168 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 10 55 IPR006456 -
Rops5g00421 168 NCBIfam ZF-HD homeobox protein Cys/His-rich dimerization domain 10 54 IPR006456 -
Rops5g00421 168 SUPERFAMILY Homeodomain-like 82 150 IPR009057 -
Rops5g00421 168 Gene3D - 78 156 - -
Rops5g00421 168 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 6 151 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops5g00421 Rops-Chr5 7223563 7224069 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops5g00421 10 151 ZF-HD Transcription Factor Family AT4G24660 47.619 2.12e-44 144
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF zf-HD Rops5g00421 ZF-HD_dimer 3.3e-22 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops5g00421 - - qsu:112019750 236.113
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops2g00019 2 532690 533222 Rops5g00421 5 7223563 7224069 PCT