Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops5g00410 ATGCCCCAGAATAAGATTTTCCATGACCCATCTTTGAATCAGATTCCTGATCTTTCCCTTCACATTAGTGTCCCAAATAGTGCTCCTTCTTCAATTTGCACTGGCATAAATGAAAGGGATTCACCCTTTGATATATGGAGAACAGATGGTGAAGGTCTCAAATCACATAGTGATGGTTCAATCAAAGGTAACACTCACACAGACACAGAACTTTCCTTAGCCAATCCCACAACACCCTCTGAGGCTGAAAGCCCCTGGAAGAGAAACTTTGTTAGAGTTGGAGAAGAAGTTGAAGCAGTAGCAAGGAAAACAAATCATGGGGTTTCAGAGTGTGTAAGATCCTTCAATGGAATCCCTTTCTACAGTAACTTTTCTTCTTTGGAAAACAATTCCTCAATAGAGAGGGACTCCAAGTTTTCTCTCTATGCAGTTCCATATCCTTCTTGTGCTACTAATTCAGCTCCTTATAATAATGGTATTATTGGGGGTGTAAGACCAATCTCAAGGTTTAATGGGATAACCATGGAGAATCTAAGACCTCAACAGTTTCAGTACTTGGACCATCACCATCAGCAGCAGCAGCATCATCAGTTTGGGATTGGAACTTCTGATTTTGCAAATGGATTTGTGAGGTCAAGAATGTTACCAAGGCAACAAAGTAGGAGGAACATGAGGGCTCCAAGAATGCGTTGGACTAGTTCTCTTCATAATCGCTTCGTTCATGCTGTTGAGTTACTTGGAGGCCATGAAAGGGCTACTCCTAAGTCTGTTTTGGAGCTCATGGATGTCAAAGATCTAACACTAGCTCATGTGAAAAGCCATCTGCAGATGTATCGGACTGTTAAGAACACTGACAAGCCAGCAGCTTCTTCAGATGGAGATGAGGATTTCATGTCCCTAACACCACCCCTTAATCAAAATCAGAATTATTTACCAAATCAGAGAGGACCTCTTAATGCATCATTAAGCAATAATCCATGGGCTAATAATTCTTCTTCCAGAAGAGGAGAACGGATACAAGCTAATTCCAGAGATCTGGATGACCTTAGTCCAGAAGAAATCCTATCATCTCAGCATATTGGGAAGCTTTCTGAGGGAAACAACTACATACAATCAAGAAGTTTCACGGATCAAAATCTAGACTGTCAGAATCCAAGCTTGGAGTTCACCTTAGGGAGATCAAATTGGCAAAGTAATGAACATGCATAA 1209 0.4111 MPQNKIFHDPSLNQIPDLSLHISVPNSAPSSICTGINERDSPFDIWRTDGEGLKSHSDGSIKGNTHTDTELSLANPTTPSEAESPWKRNFVRVGEEVEAVARKTNHGVSECVRSFNGIPFYSNFSSLENNSSIERDSKFSLYAVPYPSCATNSAPYNNGIIGGVRPISRFNGITMENLRPQQFQYLDHHHQQQQHHQFGIGTSDFANGFVRSRMLPRQQSRRNMRAPRMRWTSSLHNRFVHAVELLGGHERATPKSVLELMDVKDLTLAHVKSHLQMYRTVKNTDKPAASSDGDEDFMSLTPPLNQNQNYLPNQRGPLNASLSNNPWANNSSSRRGERIQANSRDLDDLSPEEILSSQHIGKLSEGNNYIQSRSFTDQNLDCQNPSLEFTLGRSNWQSNEHA* 403
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops5g00410 402 Gene3D - 226 283 - -
Rops5g00410 402 NCBIfam myb-like DNA-binding domain, SHAQKYF class 227 280 IPR006447 GO:0003677
Rops5g00410 402 PANTHER TRANSCRIPTION FACTOR KAN2-RELATED 16 401 IPR044847 GO:0000976|GO:0006355|GO:0010158
Rops5g00410 402 MobiDBLite consensus disorder prediction 338 352 - -
Rops5g00410 402 MobiDBLite consensus disorder prediction 58 84 - -
Rops5g00410 402 MobiDBLite consensus disorder prediction 47 86 - -
Rops5g00410 402 Pfam Myb-like DNA-binding domain 228 279 IPR001005 -
Rops5g00410 402 SUPERFAMILY Homeodomain-like 224 281 IPR009057 -
Rops5g00410 402 MobiDBLite consensus disorder prediction 282 352 - -
Rops5g00410 402 MobiDBLite consensus disorder prediction 300 337 - -
Rops5g00410 402 FunFam Myb family transcription factor 225 283 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops5g00410 Rops-Chr5 6979185 6987980 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops5g00410 208 396 G2-like Transcription Factor Family AT5G16560 52.475 4.41e-51 174
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Rops5g00410 Myb_DNA-binding 1.2e-05 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops5g00410 - - lang:109340070 476.092