Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops5g00399 ATGGTGTTAGGATGGAGAAGGAGGAAGAACAATAAAGGTGGCAAACCCAACATGGAGTTGGTGATTCCAAACCATTTCAGGTGCCCAATTTCTCTTGATTTGATGAAAGATCCTGTGACATTGTCTACTGGGATCACATATGATAGAGAAAGTATGGAAAGGTGGTTTGAAGATGGGAATTTTACATGTCCAGTTACCAACCAGATTGTGAAGAACTTTGACATGATTCCAAATCATTCTCTTAGGATAATGATTCAAGATTGGTGTGTGGAAAATAGACAACATGGGGTTGAGAGGATTCCAACTCCAAGGATTCCCATTAGCCCAATTGATGTTTCTGAGCTTCTTTTTCAAGTTAAGGCCTCAGCAAGAGGTTTGGACCAATATGGTTGTTTAGAATTGGTGCAGAAAATGGAGAGGTTGGGTGCTGAGAGTGAGAGGAACAAGAAATGTATAGTGGAGAATGGAGCACCAGGTGCATTAGCATCAGCATTTGATGCTTTTGCAAATGACTCTATTGAGAGGAATGTGATTGTTCTTGATGAGATTTTGTCAGCACTCAATTGGATGTTACCACTTCAATTGGAGGCCCAGAAATCTTTGGGGTCTCATGCTTCTTTACGTTGCATGGTTTGGTTCTTGAAGCACCAAGATCTCTTGGGGAAAGAAAAGTCCATTGTTGCTTTGAAAGAGCTTCTTTCTTTTGGTGATGAGAAACATGTGGAGACACTTTCAGAAATTGAAGGAGTCAAAGAGCTCTTGGTGGGGTTCATCAACAAGAGAATTAGTCCAAAGATCACAAAAGCTTCATTGAGGGTAGTTTGGTACTTGGTTTCATCTTCTTCACCTTCTAGTGAGAAGATGAAATTGGCATTTGTTGAATTGGGTTTGGTTTCTTCTCTTTTGGACATTCTCATTGACTCAGATAAGAGCCTTTGTGAGAAGGCTTTGGCTATTTTGGACTCCCTTTGTAGCTGTGAAGAAGGGAGGGAGAAAGCTTATGGTAATGATCTAACAATTCCTGTATTGGTGAAGAAAATTTTAAGAGTTTCAGCATTGACAACAGATTACTCTGTTTCTGCTATTTGGAAGCTTTGCAAATTTGGAGAGAAAGATGAAGGAAGAACTCTGATTGAGGCCCTTCAAGTTGGTGCCTTTCAGAAACTCTTGTTGGTGTTGCAAGTTGGTTGTGGTGATGAGACAAAGGAGAAAGCAACTGAGCTTCTCAAACTGCTGAATCCTTATAGGGCTGATTTGGAATGCATAGACTCAGATTTCAAGAATCTAAAGAGATCTTTTTAA 1302 0.4009 MVLGWRRRKNNKGGKPNMELVIPNHFRCPISLDLMKDPVTLSTGITYDRESMERWFEDGNFTCPVTNQIVKNFDMIPNHSLRIMIQDWCVENRQHGVERIPTPRIPISPIDVSELLFQVKASARGLDQYGCLELVQKMERLGAESERNKKCIVENGAPGALASAFDAFANDSIERNVIVLDEILSALNWMLPLQLEAQKSLGSHASLRCMVWFLKHQDLLGKEKSIVALKELLSFGDEKHVETLSEIEGVKELLVGFINKRISPKITKASLRVVWYLVSSSSPSSEKMKLAFVELGLVSSLLDILIDSDKSLCEKALAILDSLCSCEEGREKAYGNDLTIPVLVKKILRVSALTTDYSVSAIWKLCKFGEKDEGRTLIEALQVGAFQKLLLVLQVGCGDETKEKATELLKLLNPYRADLECIDSDFKNLKRSF* 434
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops5g00399 433 FunFam RING-type E3 ubiquitin transferase 22 93 - -
Rops5g00399 433 Pfam U-box domain 22 93 IPR003613 GO:0004842|GO:0016567
Rops5g00399 433 SUPERFAMILY ARM repeat 143 412 IPR016024 -
Rops5g00399 433 SUPERFAMILY RING/U-box 19 98 - -
Rops5g00399 433 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 6 100 IPR013083 -
Rops5g00399 433 CDD RING-Ubox_PUB 23 75 IPR045210 -
Rops5g00399 433 ProSiteProfiles U-box domain profile. 21 95 IPR003613 GO:0004842|GO:0016567
Rops5g00399 433 SMART Ubox_2 25 88 IPR003613 GO:0004842|GO:0016567
Rops5g00399 433 Gene3D - 118 412 IPR011989 -
Rops5g00399 433 PANTHER WDSAM1 PROTEIN 19 413 IPR045185 GO:0061630
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops5g00399 Rops-Chr5 6862907 6864457 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops5g00399 5 433 U-box Gene Family AT5G37490 44.218 4.16e-118 350
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops5g00399 - - gmx:100794340 699.893