Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops5g00394 ATGCATGCAAGGGTCATTCACTTGATTACTTCCAAAAATATGGAATCTAAGAGGAACAGTATTGAGACCTACAAAGATGAAGAAGAATTGGAATTAGAACAAGAAGATGGTGAAGAAGAGAAAGAAAACAATGAGATCCTCAAGAGAAGAATCTCTAGCCATCCTCTCTATGGATTGTTGGTTGAAGCTCACTTAGATTGTTTGAAGGTTGGCGACATTTCCAACTTGGACAGAGAGCTGAAGAAAGATCAGAAGCAAGTCATGAAGAAACAAAACATGGGCATGTTCAGCCAGTCTGAGTTAGATCTTTTCATGGAAGCATATTGTATGGCACTCAGCAAGCTCAAAGAAGCAATAGAGGAACCACAGCAAAAGTCCATGGCTTTCATAAATAACATGCATTCACAACTTAGGGAGCTCACCATGGCAACCACACCTGCACCTACTGAACCAGCAGCTACTACATCTTCAAGTGAGTGCACATTCAGAAGAAACCCTACAATTTAG 507 0.4063 MHARVIHLITSKNMESKRNSIETYKDEEELELEQEDGEEEKENNEILKRRISSHPLYGLLVEAHLDCLKVGDISNLDRELKKDQKQVMKKQNMGMFSQSELDLFMEAYCMALSKLKEAIEEPQQKSMAFINNMHSQLRELTMATTPAPTEPAATTSSSECTFRRNPTI* 169
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops5g00394 168 Coils Coil 73 93 - -
Rops5g00394 168 Coils Coil 25 50 - -
Rops5g00394 168 SMART KNOX2_2 91 142 IPR005541 GO:0003677|GO:0005634
Rops5g00394 168 Pfam KNOX2 domain 99 141 IPR005541 GO:0003677|GO:0005634
Rops5g00394 168 SMART KNOX1_2 45 85 IPR005540 GO:0003677|GO:0005634
Rops5g00394 168 MobiDBLite consensus disorder prediction 24 43 - -
Rops5g00394 168 MobiDBLite consensus disorder prediction 26 40 - -
Rops5g00394 168 Pfam KNOX1 domain 47 71 IPR005540 GO:0003677|GO:0005634
Rops5g00394 168 PANTHER HOMEOBOX PROTEIN KNOTTED-1-LIKE 6 ISOFORM X1 14 144 - -
Rops5g00394 168 MobiDBLite consensus disorder prediction 147 168 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops5g00394 Rops-Chr5 6734705 6739104 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops5g00394 45 140 Homeobox Transcription Factor Family AT4G08150 36.275 9.23e-13 63.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops5g00394 - - aprc:113868091 215.698