Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops5g00393 ATGAGCTTGCAATTTCGAAGAGAACGAAGGGATTGGTCTAGAGTTCCATCACAAGGTGCTGCTCGTCAAGAATGGGTTCCTAAAGGGAGTGGAGAATCCACCACTGTTGTGCAGCCATCAAATTTGCATTCAAATCATAATGCTGATGCTGGTTGTTCCAATAAAGGGGTTGCTGTTGTTCCACCTGAAACTCGCCATAGAAACAATCATGTTAATCATAGGATGGAAAGGGAAAGGGAAAGGGAAAGGGAAAAGGATAAAGGGAGGAATGGGAAGCAGGTAGGGAAGGGATTGGGATTGAGGGATTCTAATTTGCCTCAATTGGTGCAAGAGATTCAGGAGAAGCTTATGAAATGCACTGTGGAGTGTATGATTTGCTATGATATGGTTAGGAGGTCGGCACCTATTTGGTCTTGCTCTAGCTGTTACTCTATCTTTCATCTGAATTGCATCAAGAAATGGGCACGAGCACCCACCTCGGTTGATTTATCCACAGAGAAGAATCAAGGGTTTAATTGGCGATGTCCTGGTTGTCAGTCTGTGCAGCTTACATCTTCAAAGGAGATTAGATATGTTTGCTTTTGTGGGAAGAGGGTAGACCCTCCATCTGATATGTATCTGACACCACATTCATGTGGAGAACCATGTGGGAAGCCTCTTGAGAGGGAGGTGTTAGTTCCTGGAGGGAGCAAGGAGGATCTTTGCCCTCATGTTTGTGTCTTGCAATGCCATCCGGGTCCATGCCCTCCTTGTAAAGCATTTGCCCCTCCACGTTTGTGCCCTTGTGGGAAGAAAACAATTACCACCCGTTGCTCTGATCGACAATCTGTTCTTACTTGTGGCCAATATTGTGATAAGCTTCTTGAGTGTGGACGTCATCGTTGTGAACGCATTTGTCATGTGGGTCCTTGTGATCCTTGCCAGGTTCTAATCAATGCCTCTTGCTTTTGTAGTAAAGCAATGGATGTTCTTCTTTGTGGGGACATGGCTGTGAAAGGTGAATTACAAGTAGAAGGTGGAGTTTTTTCTTGTGGTTCCAATTGTGGAAAGAAACTTAGTTGTGGCAATCATATCTGTAGTGAGATTTGTCATCCAGGCAGCTGCGGGGAGTGTGAATTTTTACCAAGTTGGGTTAAGACATGTTGTTGTGGGAAAACAAGGTTGGAGGAGGAACGCAAGAGTTGTTTGGATGCAATACCTACTTGCTCACAAGTATGTGGCAAGCTCCTTCATTGTGGGATACATACTTGCAAGGAGTTATGTCATGTTGGGGAATGTCCACCTTGTTTTGTTCTAGTTTCACAGAAGTGTCGTTGTGGCTCAACTTCTCGAACCGTGGAGTGCTATCAGACATCAATGGAGAATCAGAAATTTACTTGTGAAAAGCCTTGTGGGCGAAAAAAGAATTGCGGAAGGCATCGATGTAGTGAAAGGTGTTGTCCACTTTCTAATCCAAATAACAATTTAAGTGGGGATTGGGATCCTCACTTTTGTTCCATGCCATGTGGAAAGAAGCTAAGATGTGGTCAGCATGCATGTGAATCATTGTGTCACAGTGGTCATTGCCCGCCTTGTCTTGAAACAATATTTACTGATTTGACATGTGCTTGTGGTAGGACTTCAATTCCTCCTCCTCTACCTTGTGGTACACCGCCTCCCTCATGTCAGCTTCCATGTTCAGTTCCTCAGCCATGTGGTCACTCGGGTTCTCACAGTTGCCATTTTGGAGATTGCCCTCCTTGTTCAGTGCCTGTATCAAAAGAATGTATTGGTGGGCATGTAATTCTTAGGAACATACCTTGTGGTTCAAAGGATATTAGATGCAATAATCCCTGTGGGAAGACCAGACAGTGTGGTTTACATGCATGTGGCAGAACTTGTCACCCCCCACCATGTGATAATCTGCCTGGTGGTGTGCAAGGTTTGCAAGCATCATGTGGCCAAAAATGTAGTGCTCCAAGGAGAGATTGCCGGCATTCGTGTATGGCTCCTTGTCACCCTTCATCTCCCTGCCCAGATATAAGATGTGAATTCCCTGTTACAATTACTTGCTCTTGTAGTCGTATAACAGCAAATGTTCCTTGTGATGCTGGTGGTACCAATAGTAATTATAATGCTGATGCCATACATGAAGCTTCCATTATTCAAAAATTGCCGGTGCCACTTCAACCTGTTGATGCAAATGGCAAAAAAGTTCCCCTTGGACAAAGGAAGTTGATGTGTGATGACGAATGTGCTAAGTTAGAGCGTAAAAGAGTTCTTGCTGATGCTTTTGACATTACTGCTCCAAATCTGGATTCTCTTCATTTTGGTGAGAATTTTATGTCTTCTGAATTGCTTTCTGACATGTTTAGACGTGATCCAAAATGGATTTTAGCTGTTGAGGAGAGATGCAAAATTTTAGTACTTGGCAAGAGCAAAGGAACTACACATGGTTTAAAAGTCCATGTTTTTTGTCATATGCCGAAGGATAAAAGAGATGTGGTGAGGTTGATTGCTGAAAGATGGAAGCTTGCAGTGAATGCTGCTGGCTGGGAGCCAAAGCGATTTATTGTAATTTCTGTTACCCCAAAATCAAAGGCCCCAGCTCGTGTGCTAGGGGTTAAGGGTACCACAACTTTAAATGTGCCCCTTCCTCCTGCATTTGATCCTTTGGTAGATATGGACCCGCGGCTTGTTGTCTCATTTCCAGACTTACCAAGGGATGCTGATATTAGTGCCTTGGTGTTGAGATTTGGTGGTGAATGTGAGCTTGTTTGGTTGAATGACAAGAATGCATTGGCTGTTTTCAATGATCCTGCTAGGGCAGCAACTGCAATGAGGAGGTTGGATCATGGAACAGTTTATCAGGGTGCTGTTTCGTTTGTCCCAAATGTTGGGGCATCGGTGTCATCTTCAACTACCAATGCCTGGGGAGGAGCTGGTACAATGAAAGAGAGAGGAGCATTGTCAACATTGAAAGGTAATCCATGGAAAAAGGCTGTGGTTCAAGAGCCTGGTTGGAAAGAAGATTCTTGGGGTGATGAAGAATGGGCTACTTGTTCTGCAAATATTCAACCACCTATTCCGAAGAAAGAAGCACCAATAACCACATCTTTGAATCGTTGGAATGTCTTAGACCAAGAATCAAGTTCAAGTTCATTGTCTACAACCATTAGAACTCAAGTTTCAGGGAAACAAATCGATGGCAGTTCCGTCTCGAGGTTGGAGTCTCATGCAGGTGGCTCAAATGAAGAAGGGCAACTTGGAGGAAACTTGGATGTTTCTGAAGTGGTAGATGATTGGGAGAAGGCTTATGAATGA 3303 0.4402 MSLQFRRERRDWSRVPSQGAARQEWVPKGSGESTTVVQPSNLHSNHNADAGCSNKGVAVVPPETRHRNNHVNHRMEREREREREKDKGRNGKQVGKGLGLRDSNLPQLVQEIQEKLMKCTVECMICYDMVRRSAPIWSCSSCYSIFHLNCIKKWARAPTSVDLSTEKNQGFNWRCPGCQSVQLTSSKEIRYVCFCGKRVDPPSDMYLTPHSCGEPCGKPLEREVLVPGGSKEDLCPHVCVLQCHPGPCPPCKAFAPPRLCPCGKKTITTRCSDRQSVLTCGQYCDKLLECGRHRCERICHVGPCDPCQVLINASCFCSKAMDVLLCGDMAVKGELQVEGGVFSCGSNCGKKLSCGNHICSEICHPGSCGECEFLPSWVKTCCCGKTRLEEERKSCLDAIPTCSQVCGKLLHCGIHTCKELCHVGECPPCFVLVSQKCRCGSTSRTVECYQTSMENQKFTCEKPCGRKKNCGRHRCSERCCPLSNPNNNLSGDWDPHFCSMPCGKKLRCGQHACESLCHSGHCPPCLETIFTDLTCACGRTSIPPPLPCGTPPPSCQLPCSVPQPCGHSGSHSCHFGDCPPCSVPVSKECIGGHVILRNIPCGSKDIRCNNPCGKTRQCGLHACGRTCHPPPCDNLPGGVQGLQASCGQKCSAPRRDCRHSCMAPCHPSSPCPDIRCEFPVTITCSCSRITANVPCDAGGTNSNYNADAIHEASIIQKLPVPLQPVDANGKKVPLGQRKLMCDDECAKLERKRVLADAFDITAPNLDSLHFGENFMSSELLSDMFRRDPKWILAVEERCKILVLGKSKGTTHGLKVHVFCHMPKDKRDVVRLIAERWKLAVNAAGWEPKRFIVISVTPKSKAPARVLGVKGTTTLNVPLPPAFDPLVDMDPRLVVSFPDLPRDADISALVLRFGGECELVWLNDKNALAVFNDPARAATAMRRLDHGTVYQGAVSFVPNVGASVSSSTTNAWGGAGTMKERGALSTLKGNPWKKAVVQEPGWKEDSWGDEEWATCSANIQPPIPKKEAPITTSLNRWNVLDQESSSSSLSTTIRTQVSGKQIDGSSVSRLESHAGGSNEEGQLGGNLDVSEVVDDWEKAYE* 1101
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops5g00393 1100 PANTHER NUCLEAR TRANSCRIPTION FACTOR, X-BOX BINDING 1 NFX1 50 1009 IPR034078 GO:0003700
Rops5g00393 1100 MobiDBLite consensus disorder prediction 28 51 - -
Rops5g00393 1100 SUPERFAMILY RING/U-box 112 182 - -
Rops5g00393 1100 MobiDBLite consensus disorder prediction 1 15 - -
Rops5g00393 1100 CDD NF-X1-zinc-finger 280 328 - -
Rops5g00393 1100 CDD RING-CH-C4HC3_NFX1-like 122 179 - -
Rops5g00393 1100 ProSiteProfiles Zinc finger PHD-type profile. 120 181 IPR019787 -
Rops5g00393 1100 MobiDBLite consensus disorder prediction 1047 1100 - -
Rops5g00393 1100 CDD NF-X1-zinc-finger 212 273 - -
Rops5g00393 1100 Pfam NF-X1 type zinc finger 237 252 IPR000967 GO:0005634|GO:0008270
Rops5g00393 1100 Pfam NF-X1 type zinc finger 508 525 IPR000967 GO:0005634|GO:0008270
Rops5g00393 1100 Pfam NF-X1 type zinc finger 470 481 IPR000967 GO:0005634|GO:0008270
Rops5g00393 1100 Pfam NF-X1 type zinc finger 354 371 IPR000967 GO:0005634|GO:0008270
Rops5g00393 1100 Pfam NF-X1 type zinc finger 290 308 IPR000967 GO:0005634|GO:0008270
Rops5g00393 1100 Pfam NF-X1 type zinc finger 412 429 IPR000967 GO:0005634|GO:0008270
Rops5g00393 1100 Pfam NF-X1 type zinc finger 618 633 IPR000967 GO:0005634|GO:0008270
Rops5g00393 1100 Pfam NF-X1 type zinc finger 565 582 IPR000967 GO:0005634|GO:0008270
Rops5g00393 1100 SMART znfxneu3 290 309 IPR000967 GO:0005634|GO:0008270
Rops5g00393 1100 SMART znfxneu3 618 652 IPR000967 GO:0005634|GO:0008270
Rops5g00393 1100 SMART znfxneu3 235 253 IPR000967 GO:0005634|GO:0008270
Rops5g00393 1100 SMART znfxneu3 412 431 IPR000967 GO:0005634|GO:0008270
Rops5g00393 1100 SMART znfxneu3 657 678 IPR000967 GO:0005634|GO:0008270
Rops5g00393 1100 SMART znfxneu3 508 527 IPR000967 GO:0005634|GO:0008270
Rops5g00393 1100 SMART znfxneu3 354 373 IPR000967 GO:0005634|GO:0008270
Rops5g00393 1100 SMART znfxneu3 565 583 IPR000967 GO:0005634|GO:0008270
Rops5g00393 1100 MobiDBLite consensus disorder prediction 66 92 - -
Rops5g00393 1100 CDD NF-X1-zinc-finger 498 541 - -
Rops5g00393 1100 MobiDBLite consensus disorder prediction 1 100 - -
Rops5g00393 1100 ProSiteProfiles Zinc finger RING-type profile. 123 179 IPR001841 -
Rops5g00393 1100 CDD NF-X1-zinc-finger 402 450 - -
Rops5g00393 1100 CDD NF-X1-zinc-finger 555 603 - -
Rops5g00393 1100 MobiDBLite consensus disorder prediction 1047 1074 - -
Rops5g00393 1100 CDD NF-X1-zinc-finger 344 389 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops5g00393 Rops-Chr5 6703897 6707843 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-X1 Rops5g00393 zf-NF-X1 2.8e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops5g00393 K12236 - gmx:100789059 1803.88