Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops5g00392 ATGATCGCACATCGTGGACACTTGCCAGAATCCATTGCCCACCAATACTTCCAGCAACTCGTCTCCGCTCTTCGCTTCTGCCACCGTAACGACGTCACCCACCGTGACCTCAAGCCGCATAATCTTCTCCTCGACACCGACGGTAATCTCAAGGTCTCAGAGTTCGGACTCTCCACCTTACCGGAGCAGCTAAACAACGGTCTCCTCCACACCGCATGCGGCACACCGGCGTACGTCGCCACAGAGATTCTCCCCCAGAGCGACGAATACAATGGGTCCAAAGCAGACGCGTGGTCGTGCGGCCTCTTTCTCTTCGTTCTTATCGTCGGTCATCTTCCGTTCGACGATTCGAACATTCCGGTGATGTGCAAGAAGATTTCTCGACGAGACTACAAGTTCCCGGAGTGGATTTCAAAGCGTGCCTGTTTCATGATCTATAGGTTTTATGAACCGGTTCGTAACCGATTTAAACCAGATTGA 480 0.525 MIAHRGHLPESIAHQYFQQLVSALRFCHRNDVTHRDLKPHNLLLDTDGNLKVSEFGLSTLPEQLNNGLLHTACGTPAYVATEILPQSDEYNGSKADAWSCGLFLFVLIVGHLPFDDSNIPVMCKKISRRDYKFPEWISKRACFMIYRFYEPVRNRFKPD* 160
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops5g00392 159 SMART serkin_6 1 157 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops5g00392 159 SUPERFAMILY Protein kinase-like (PK-like) 2 149 IPR011009 -
Rops5g00392 159 ProSiteProfiles Protein kinase domain profile. 1 159 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops5g00392 159 Gene3D Transferase(Phosphotransferase) domain 1 1 155 - -
Rops5g00392 159 ProSitePatterns Serine/Threonine protein kinases active-site signature. 32 44 IPR008271 GO:0004672|GO:0006468
Rops5g00392 159 Pfam Protein kinase domain 3 120 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops5g00392 159 FunFam Maternal embryonic leucine zipper kinase 1 154 - -
Rops5g00392 159 PANTHER CALCIUM/CALMODULIN-DEPENDENT PROTEIN KINASE KINASE-RELATED 6 142 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops5g00392 Rops-Chr5 6695632 6696111 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops5g00392 2 151 Miscellaneous Gene Families AT3G23000 65.333 2.16e-70 216
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CAMKL-CHK1 Rops5g00392 Pkinase 9.6e-33 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops5g00392 K12761 - gmx:100811834 244.588