Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops5g00389 ATGTTCATGTTCTTTCTCTTTATCATCATCTTCTCAATAATCATCCTCCCCTCAAGTGTCAAGTTCCATGTAACTGAAGCCACCCTCATGCAGTTCAACCTTGCCAGCAACAACAACACCTTATATTACAAATTCAAAGTAAACATCACAGCAACAAACCCCAACAAGCACATCATAGTGTATTATAGGAGTATCACAGCAAGTGCTTGGTACAAAGATAACTACTTTGGTTATGTGAATTTGGAACCCTTTGACCAAGGTCACAAGAATACCACATTCCTTGAACCTGCAGTGTTTGAAGGGCAGAGTGTGATCAAACTCAAACCTAAACAGCTTTGTGAATATAACAAGGAGACAAGTGTTGGGATTTACAATGACTTGGCTGTGAATTTGGATGTTAGAATCAGAACTAAGTTTGGATGGGTAAAGAGCAGTCGTTTCAATGCACCTGTTGTGTTGTGTAGACACTTGAGAGTTCCTTTGATTTCCAATGGTAAGTTAGCATCTCCTTTTAATGTCACTAAATGTATCACTGGTGATTTCTTTCAAGATCGTGATGCATACTGA 567 0.388 MFMFFLFIIIFSIIILPSSVKFHVTEATLMQFNLASNNNTLYYKFKVNITATNPNKHIIVYYRSITASAWYKDNYFGYVNLEPFDQGHKNTTFLEPAVFEGQSVIKLKPKQLCEYNKETSVGIYNDLAVNLDVRIRTKFGWVKSSRFNAPVVLCRHLRVPLISNGKLASPFNVTKCITGDFFQDRDAY* 189
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops5g00389 188 PANTHER OS05G0367900 PROTEIN 4 159 IPR044839 GO:0098542
Rops5g00389 188 Pfam Late embryogenesis abundant protein 49 145 IPR004864 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops5g00389 Rops-Chr5 6635095 6635661 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops5g00389 14 187 SNARE and Associated Proteins AT1G32270 29.379 6.75e-17 75.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops5g00389 - - gmx:100784278 250.366