Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops5g00379 ATGCCAATCTCACACAAACTCTCTTCTTCCTTCTTCTTCTTTCTTCTTCTCCCTCTTCTCTCCAACTCAGATCTCCTTTCTGAACGCACCGCACTCTTATCCCTACGCGCCTCCGTGGGTGGCAGAACCCTCCTCTGGAACACCACTTTCACCAACCCATGCAACTGGGCCGGTGTCAAATGCAACCAAAACAACACCCACGTGGTGGAGCTTCGCCTTCCCGGAGTTGCTCTCTCCGGCGACCTCCCCGCAGGCGTGTTCTCCGAGCTCCCTAACCTCCACACCCTCAGCCTCCGCTTCAATGCCCTCACCGGAAACCTCCCCGCAGACCTTGCCGGTTGCTCCTCCCTCAGAAACCTCTACCTTCAGCAGAACCTTTTTTCCGGTGAAGTTCCGGCGACCCTTTTCCGGCTAACCGGACTTGTGAGACTCAACTTGGCAGGGAACAACTTTTCCGGCGAGGTTCCGGTGGGGTTCCGGAACTTAACCCGGTTGAGGACACTGTTGCTACAGAACAACCGGTTTACCGGGTCACTGCCTGAGTTGACTGGGGGTCAACTCGCTCAGTTCAATGTCTCAAACAATATGCTCAATGGTTCAGTTCCTGAAAAGTTGCAAACTTTTGGTAAAGATTCGTTTTTGGGTAATTTCCTATGTGGGAAACCCCTTAATCCTTGTCCTGGGGATGCCAATAGTCCTAAAGGGTCTCCAAATGTTAATGGGTCTTCTTCAGGTGCGGTTGGAGTTGGAGACAATGGGGTGAAGGATATGGGGGGAAAGAAGAAGAGCAAGTTATCTGGTGGAGCCATTGCTGGAATTGTTATTGGGGTTGTGGTAGTTCTTTTGTTTGTTGCTTTTGCTTTGATTCTTTTGTGTAGAAAAAAGAGTGGAGAGAAAAAGACTAGTTCTTTTGATGACTTGGCAGCAACTGTGAAGCATGATGAGGTGGAAATTGGGGGTCAAAATGTGGAGAATGGTAATGGGTACTCAGTGGTGGCAGGGAATGGTGGTGTTAGGGGTGAAGGGGTTGTTGGTGGTGGTGGAGCTAAAAAGTTGGTGTTTTTTGGTAATTCGGGTAAGGTGTTTGATTTGGAGGATTTGCTTAGAGCTTCTGCTGAGGTTTTGGGGAAAGGAACTTTTGGGACTGCTTATAAGGCTGTTTTGGAGGCTGGACCTGTGGTGGCTGTGAAGAGGTTGAAGGATGTGACCATTTCTGAGAAGGAATTCAAGGAGAAGATTGAAGTGGTTGGAGCAATGGATCATGAAAATTTGGTCCCTCTCAGGGCTTACTATTATAGCAGGGATGAGAAGCTTCTTGTTCATGATTACTTGTCAATGGGAAGCTTATCTGCACTTTTGCATGGAAACAAAGGAGCAGGTAGAACACCACTGAATTGGGAAATCAGATCAGGCATTGCACTTGGAGCTGCTCGTGGCATTGAGTACCTACATTCACAAGGGCCTAATATTTCTCATGGAAACATAAAATCATCAAACATCCTCCTAACCAAATCCTATGATGCCAAAGTATCTGATTTTGGCCTTTTACACCTTGTCGGTCCTTCATCCACACCCAACAGAGTTGCTGGTTACCGTGCTCCCGAAGTAACCGATCCTCGCAAAGTATCTCAAAAGGCAGATGTATACAGCTTTGGTGTGTTACTCTTGGAACTTCTCACTGGAAAGGCTCCAACTCATGCACTCTTAAATGAGGAAGGAGTGGACCTTCCAAGGTGGGTGCAATCAGTTGTTAAAGAAGAGTGGACTTCTGAGGTCTTTGATCTTGAGCTTCTTAGGTATCAAAATGTTGAAGAGGAAATGGTTCAGTTGTTGCAACTTGCAGTAGATTGTGCAGCTCCATACCCTGATAACCGCCCTTCAATGTCTGAAGTGAGAAAGCACATAGAAGAGTTACGTAGGTCTAGCTTGAAAGAGGGTCAAGACCAAATCCAACAACCTGATTTGATCAATGATATAGATGATATATCTTCTCGATGA 1998 0.47 MPISHKLSSSFFFFLLLPLLSNSDLLSERTALLSLRASVGGRTLLWNTTFTNPCNWAGVKCNQNNTHVVELRLPGVALSGDLPAGVFSELPNLHTLSLRFNALTGNLPADLAGCSSLRNLYLQQNLFSGEVPATLFRLTGLVRLNLAGNNFSGEVPVGFRNLTRLRTLLLQNNRFTGSLPELTGGQLAQFNVSNNMLNGSVPEKLQTFGKDSFLGNFLCGKPLNPCPGDANSPKGSPNVNGSSSGAVGVGDNGVKDMGGKKKSKLSGGAIAGIVIGVVVVLLFVAFALILLCRKKSGEKKTSSFDDLAATVKHDEVEIGGQNVENGNGYSVVAGNGGVRGEGVVGGGGAKKLVFFGNSGKVFDLEDLLRASAEVLGKGTFGTAYKAVLEAGPVVAVKRLKDVTISEKEFKEKIEVVGAMDHENLVPLRAYYYSRDEKLLVHDYLSMGSLSALLHGNKGAGRTPLNWEIRSGIALGAARGIEYLHSQGPNISHGNIKSSNILLTKSYDAKVSDFGLLHLVGPSSTPNRVAGYRAPEVTDPRKVSQKADVYSFGVLLLELLTGKAPTHALLNEEGVDLPRWVQSVVKEEWTSEVFDLELLRYQNVEEEMVQLLQLAVDCAAPYPDNRPSMSEVRKHIEELRRSSLKEGQDQIQQPDLINDIDDISSR* 666
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops5g00379 665 Pfam Leucine rich repeat N-terminal domain 27 62 IPR013210 -
Rops5g00379 665 FunFam Probable inactive receptor kinase At1g48480 444 646 - -
Rops5g00379 665 Gene3D Ribonuclease Inhibitor 187 226 IPR032675 -
Rops5g00379 665 ProSitePatterns Protein kinases ATP-binding region signature. 375 397 IPR017441 GO:0005524
Rops5g00379 665 MobiDBLite consensus disorder prediction 645 665 - -
Rops5g00379 665 MobiDBLite consensus disorder prediction 228 254 - -
Rops5g00379 665 MobiDBLite consensus disorder prediction 231 247 - -
Rops5g00379 665 SUPERFAMILY Protein kinase-like (PK-like) 373 636 IPR011009 -
Rops5g00379 665 ProSiteProfiles Protein kinase domain profile. 369 637 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops5g00379 665 Gene3D Phosphorylase Kinase; domain 1 348 443 - -
Rops5g00379 665 Pfam Protein kinase domain 372 634 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops5g00379 665 Pfam Leucine rich repeat 81 126 IPR001611 GO:0005515
Rops5g00379 665 FunFam pollen receptor-like kinase 1 340 443 - -
Rops5g00379 665 MobiDBLite consensus disorder prediction 642 665 - -
Rops5g00379 665 Gene3D Transferase(Phosphotransferase) domain 1 444 662 - -
Rops5g00379 665 PANTHER OS05G0588300 PROTEIN 12 642 - -
Rops5g00379 665 SUPERFAMILY L domain-like 45 207 - -
Rops5g00379 665 Gene3D Ribonuclease Inhibitor 26 183 IPR032675 -
Rops5g00379 665 FunFam Probable inactive receptor kinase RLK902 25 183 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops5g00379 Rops-Chr5 6537760 6540682 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops5g00379 24 654 Receptor kinase-like Gene Family AT1G48480 61.692 0.0 763
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-III Rops5g00379 Pkinase 4.9e-39 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops5g00379 - - gmx:100781597 866.685