Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops5g00378 ATGGTCTTCAAAGGAAGGTTCTTCTCTTCCAAGAAATCCGATTCTTCTAATAGCCCCGATGCTTCTTCAAACAGCCCTAGATCACTCTCTTCAAATTCCCCTTCCAGATCCGACAAGAGAAAACCGAAATCTACGCCGAATCAAACCCTAGCCGTCACCGGCGGCGGCGGTGGAGGAGGATTCGGCGGCGCCGCCGCCGCCGCATGCGGCCAGACCCAAGTCAAGGACGGGACAAAGAAGAAGGATTTATCCAAAGGTAAAGAAAGTCAAACTCCGCTGCAATCCGGCGGCAAGAAGTTGACTCCGCCGCCGCCTGCGGCTGCAGAGGGGAAGGAATCGCAGTCGTCGTCTTCGGTTTCGCCGATTTTAGCTTCGTCTCTTGGATTGAACAGGATAAAGACGAGATCGGGGCCGTTGCCGCAGGAGAGCTTCTTCGGGTTCCGTGGCGGCGATAAAGGTGCGGCGGCAACGCTTGGTGCTAGTAATCTCTCGAGGCCTGGTGGTGGGAAGAAGAAGGAAGGGGTGAAACAGAATAGAGTTGGGTTTCATGAGGGTTTTGATGATGAGAGTAATTCTGATAGCATGTCGACGGGGAGTCGTGTGCCGTCGAGGGAACAAAGTCCGATGGTGTTGCCAAGGTCGAGGTTACAGAATGGAGAGTCATCATCTGAAGCAGGGAAGCAGGCATCATCACTGGGTCAGACTGGAGGCTTAAGAAGTGCAGATGTTTGCACTCCAGAGACAGCATATGATTTCGAAAATCCGAAGGAGTCTGAATCTCCTCGTTTTCAAGCTATATTACGTCTCACAAGTGCGCCCAGAAAGAGGTTTCCTGCAGATATCAAGAGTTTTTCCCATGAGTTGAATTCCAAAGGTGTCCGGCCTTTTCCATTTTGGAAGCCTCGAGGGTTAAATAACCTTGAGGAGATCTTGGTTGTCATTAGGGCCAAATTTGATAAAGAAAAGGAAGAGGTGAACTCTGAGCTGGCTATTTTTGCATCAGACCTGGTTGAAATTCTTGAAAAAAATGCAGATACTCATCCTGAATGGCAAGAGACAATTGAGGACTTGCTAGTTTTGGCTAGGCGCTGTGCTATGACTTCATCTGGGGAGTTTTGGCTTCAGTGTGAAAGCATAGTTCAGGAGTTGGATGATAGGCGTCAAGAGCTTCCTCCAGGGACGTTAAAGCAGCTTCACACTCGAATGCTTTTCATTCTCACAAGGTGTACTAGATTGTTGCAATTCCACAAGGAAAGTGGTTTTGCTGACGATGAACATGTTTTCAATCTCCGTCAATCTAGAGTCTTGCATTCTGCTGAAAAAGGTATTCCTCCTGGTGTGGGAAGGGATACTAAAAGTTCTACTGCTGCAAAGACCTCAAAGGCTTCATCAAAAAAAGCTTATAGCCAAGAGCAGAGTATCTTGGGTTGGAAGAAAGATGTTATGCAACCAGAAAATTTGTTGCTTCCTGCTGATGATGACACTTCTAAACACTTTGAGTCTCCTTCTGGCAGGGATAGAATGGCTTCTTGGAAGAAATTCCCATCTCCCTCAGGAAGAAGCCCAAAAGAAACTGCTCAGTTGAAGGACCAAAATTATGGGAGGGTTGAACGTTCAAAGACATCAAATAATAAGAGATTCCCTTCTGATGTAGATCTCTTTGTTGTTAAGCCATCTGAGCTTGTCCCTATCAAAGATTCCCAGGACCATGCTTCCAAGCACCAACACAAAGTTTCCTGGGGCTACTGGGGAGATCAGCCAAATAGTAGTGATGAACATTCAATAATTTGTCGTATATGTGAAGAGGAAGTACCTACTTCACATGTTGAAGATCATTCAAGGATTTGTGCAGTTGCTGACAGATGTGATCAGAAGGGTCTGAGTGTCAATGAGCGTCTTGTCAGAATTGCTGAAACACTAGAAAAGATGATGGAATCATGTACACAGAAGGATACCCAACAAATAGTGGGAAGTCCCGATGTTGCGAAAGTGTCAAATTCAAGTATGACTGAAGAATCTGATGTTCTTTCCCCTAAACTTAGTGATTGGTCACGCAGAGGCTCAGAGGATATGCTTGACTGTTTCCCTGAAACTGATAATTCTGTTTTTATGGATGACCTAAAGGGATTGCCACTTATGTCATGTAAAACTCGTTTCGGTCCAAAGTCTGACCAAGGTATGACAACATCATCCGCAGGCAGCGTGACTCCTAGGTCTCCTTTAATGACGCCAAGGACAAGTCAGATTGATTTACTTTTGGCAGGGAAGGGTGCTTATTCCGAACATCATGATCTGCCACAGATGAATGAACTTGCTGATATAGCACGATGTGTGGCAAATGCACCTCTGGATGATGATCGCACAACATCATATTTATTATCTTGTCTTGATGACTTGCGGGTTGTTGTAGAACGAAGGAAATATGATGCACTTACTGTGGAGACCTTTGGAACACGCATCGAGAAGCTGATACGGGAGAAGTATTTGCAGCTTACTGAGATGGTGGATGTTGAAAAGATAGATATGGAGAGCACTGTGATGGATGATGATGTTCTCGTGGAAGATGATGTGGTTCGCAGCTTGAGAACAAGCCCAATCCATTCTTCAAGGGATCGTACGTCTATTGATGACTTTGAGATTATAAAACCTATCAGTCGTGGGGCATTTGGAAGGGTTTTCTTGGCTAAAAAGAGAACAACTGGGGATCTTTTTGCAATAAAGGTTCTCAAGAAGGCAGATATGATCCGTAAGAATGCTGTGGAAAGTATATTAGCAGAACGTGATATCTTAATTACAGTGCGCAATCCTTTTGTGGTTCGGTTTTTCTATTCTTTTACATGTCGTGAGAACTTGTATCTTGTGATGGAGTATCTGAATGGAGGTGATCTGTATTCATTATTAAGGAATTTAGGTTGCCTAGATGAGGAAGTTGCCCGTGTATATATTGCTGAAGTGGTGCTTGCATTAGAGTATTTGCATTCACTGCGTGTGGTTCATCGTGACTTGAAGCCTGACAATTTATTGATTGCACATGATGGTCACATCAAGTTAACAGACTTTGGGCTTTCAAAAGTCGGTCTCCTCAACAGCACAGATGATTTGGCTGGTCCAGCTGTGAGTGGGACATCCCTACTTGGGGAGGATGAACCTCATGAATTTACATCTGAGGATCAAAGGGAACGGAGGAAGAAACGTTCTGCTGTGGGCACACCTGATTACTTAGCACCAGAGATACTTTTGGGAACTGGACATGGGTATACTGCTGATTGGTGGTCTGTTGGGGTCATTTTATTTGAGTTACTTGTTGGTATTCCACCCTTCAATGCAGAGCATCCTCAGACTATATTTGATAATATTCTTAATCGCAAGATACCTTGGCCTGGGATTCCTGAAGAAATGAGCCCTGAAGCACAGGATCTAATTGATCGATTATTGACAGAAGATCCTAATCAAAGACTAGGAGCCAGAGGAGCATCAGAGGTGAAGCAACATGTTTTCTTCAAGGATATAAACTGGGACACGCTTGCCAGGCAAAAGGCTGCATTTGTTCCTGCTTCTGAGAGTGCTCTAGATACCAGTTACTTCACTAGTCGCTATTCATGGAATACTTCTGATGGCCTTGTATATCCAGCAAGTGATGTTGAGGATTCTAGTGATGCTGATAGCTTAAGTGGAAGCAGTAGTTGCTTTAGCAATCGCCAAGATGAAGTGGGAGATGAATGTGGGGGTCTTGCTGAGTTTGATTCTAGTTCATCTGTCAATTACTCTTTTAGTAATTTCTCCTTTAAGAATCTCTCCCAGCTTGCATCGATCAACTATGATCTCACCAAGGGATGGAAAGATGATCCGCCAACAAATTCTAAACCTTTGTTGTTTTTATACCTTGTACATAGATTTAGAGGCTCAAAGTGGTTCAGGATGTACTCTTTGCTTATTAGGTTACAGTGA 3948 0.4438 MVFKGRFFSSKKSDSSNSPDASSNSPRSLSSNSPSRSDKRKPKSTPNQTLAVTGGGGGGGFGGAAAAACGQTQVKDGTKKKDLSKGKESQTPLQSGGKKLTPPPPAAAEGKESQSSSSVSPILASSLGLNRIKTRSGPLPQESFFGFRGGDKGAAATLGASNLSRPGGGKKKEGVKQNRVGFHEGFDDESNSDSMSTGSRVPSREQSPMVLPRSRLQNGESSSEAGKQASSLGQTGGLRSADVCTPETAYDFENPKESESPRFQAILRLTSAPRKRFPADIKSFSHELNSKGVRPFPFWKPRGLNNLEEILVVIRAKFDKEKEEVNSELAIFASDLVEILEKNADTHPEWQETIEDLLVLARRCAMTSSGEFWLQCESIVQELDDRRQELPPGTLKQLHTRMLFILTRCTRLLQFHKESGFADDEHVFNLRQSRVLHSAEKGIPPGVGRDTKSSTAAKTSKASSKKAYSQEQSILGWKKDVMQPENLLLPADDDTSKHFESPSGRDRMASWKKFPSPSGRSPKETAQLKDQNYGRVERSKTSNNKRFPSDVDLFVVKPSELVPIKDSQDHASKHQHKVSWGYWGDQPNSSDEHSIICRICEEEVPTSHVEDHSRICAVADRCDQKGLSVNERLVRIAETLEKMMESCTQKDTQQIVGSPDVAKVSNSSMTEESDVLSPKLSDWSRRGSEDMLDCFPETDNSVFMDDLKGLPLMSCKTRFGPKSDQGMTTSSAGSVTPRSPLMTPRTSQIDLLLAGKGAYSEHHDLPQMNELADIARCVANAPLDDDRTTSYLLSCLDDLRVVVERRKYDALTVETFGTRIEKLIREKYLQLTEMVDVEKIDMESTVMDDDVLVEDDVVRSLRTSPIHSSRDRTSIDDFEIIKPISRGAFGRVFLAKKRTTGDLFAIKVLKKADMIRKNAVESILAERDILITVRNPFVVRFFYSFTCRENLYLVMEYLNGGDLYSLLRNLGCLDEEVARVYIAEVVLALEYLHSLRVVHRDLKPDNLLIAHDGHIKLTDFGLSKVGLLNSTDDLAGPAVSGTSLLGEDEPHEFTSEDQRERRKKRSAVGTPDYLAPEILLGTGHGYTADWWSVGVILFELLVGIPPFNAEHPQTIFDNILNRKIPWPGIPEEMSPEAQDLIDRLLTEDPNQRLGARGASEVKQHVFFKDINWDTLARQKAAFVPASESALDTSYFTSRYSWNTSDGLVYPASDVEDSSDADSLSGSSSCFSNRQDEVGDECGGLAEFDSSSSVNYSFSNFSFKNLSQLASINYDLTKGWKDDPPTNSKPLLFLYLVHRFRGSKWFRMYSLLIRLQ* 1316
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops5g00378 1315 MobiDBLite consensus disorder prediction 452 469 - -
Rops5g00378 1315 Pfam Protein kinase domain 878 1167 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops5g00378 1315 ProSiteProfiles AGC-kinase C-terminal domain profile. 1168 1272 IPR000961 GO:0004674|GO:0005524|GO:0006468
Rops5g00378 1315 ProSiteProfiles Protein kinase domain profile. 878 1167 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops5g00378 1315 MobiDBLite consensus disorder prediction 721 741 - -
Rops5g00378 1315 Coils Coil 304 324 - -
Rops5g00378 1315 Gene3D Phosphorylase Kinase; domain 1 876 1196 - -
Rops5g00378 1315 MobiDBLite consensus disorder prediction 110 132 - -
Rops5g00378 1315 FunFam probable serine/threonine protein kinase IREH1 876 965 - -
Rops5g00378 1315 MobiDBLite consensus disorder prediction 169 190 - -
Rops5g00378 1315 CDD STKc_MAST_like 884 1172 - -
Rops5g00378 1315 MobiDBLite consensus disorder prediction 530 544 - -
Rops5g00378 1315 MobiDBLite consensus disorder prediction 439 469 - -
Rops5g00378 1315 MobiDBLite consensus disorder prediction 9 33 - -
Rops5g00378 1315 MobiDBLite consensus disorder prediction 1049 1067 - -
Rops5g00378 1315 Gene3D Transferase(Phosphotransferase) domain 1 962 1185 - -
Rops5g00378 1315 ProSitePatterns Serine/Threonine protein kinases active-site signature. 997 1009 IPR008271 GO:0004672|GO:0006468
Rops5g00378 1315 MobiDBLite consensus disorder prediction 1039 1067 - -
Rops5g00378 1315 MobiDBLite consensus disorder prediction 191 238 - -
Rops5g00378 1315 PANTHER SERINE/THREONINE-PROTEIN KINASE 567 1261 - -
Rops5g00378 1315 MobiDBLite consensus disorder prediction 1 240 - -
Rops5g00378 1315 SMART serkin_6 878 1167 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops5g00378 1315 MobiDBLite consensus disorder prediction 491 507 - -
Rops5g00378 1315 SUPERFAMILY Protein kinase-like (PK-like) 875 1207 IPR011009 -
Rops5g00378 1315 MobiDBLite consensus disorder prediction 489 544 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops5g00378 Rops-Chr5 6514705 6534958 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops5g00378 63 1283 AGC Kinase Gene Family AT3G17850 66.799 0.0 1638
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK AGC_MAST Rops5g00378 Pkinase 2.2e-65 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops5g00378 - - gmx:100776995 2097.78