Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops5g00377 ATGGAGAGGGAATTTTTAAGCTTGAGTTCCAAAAATGGTGCATGGACTACTATGAAAGAAGATGGTGCCAACAACCCAAAACACCCAGTGAGAGGTTCAGGAATGCAGTGGTCATTCTCAAACAAGGTCTCAGCCCTTCCTCAATTCCTGTCTTTCAAGACCTCTCAGGGAGATGGGCAGAGAAACACTGTTCTTGATCCACTAGCTTCATCCGGTTATATGACCATCTCAAATAAAAATGCTTTTGACTCAAACCAGAAACCATTCTTGGGTTTGAACCAGAAAAGTTTTTCCATTGGCATGCAACCAGTAAACAAACATGGAATGACAGTGTATCCTCTGCAATGTTCTGATGCACAATCAGCTTGTGTTCAGGAAGCAAGAAGATTTTCAGTTTCCAACCAATCTAATCAAGTGACTCCTGTTCTTCAATCTAATGTGGCTACTACAGGATTGAACATGGTCAACACAGCCATAAAGCCACAATCTCTTGGTTCCAAATTCTCTGGCACACCTGTATCTGTTCTTCCATCACTAGGTTCCATTGTTGGCTCTACTGACTTAAGGAATTGTTCCAAATCCTCTGGCACACCAGCTCAGCTGACCATTTTCTATGCTGGTTCAGTATGTGTGTATGATGACATATCTGTTGAGAAGGCTCAGGCTATCATGTTACTAGCTGGAAATGGGTCTACTCCACCAAATCAAAACATGACAGTTTCCACAGCTAAATTGCAGCCAGAAATTCCTCTTTCCTCCAAAGATGATGGTTTCAAGATAAGCCAATCCTATCCCTCACCCTCACCACTACCAAGCCCTCTTCCAAAGACCTCTCATGCAAGTTCTCAGCCTAGGGGAGGATCTTCTAGCAACAATGAACTTACAATAATAAGACCAGTAGGACCTTCAACTGCTCCTACTAAACATTTGGAATCTCCTATAATTGTTGGTTCTGTAGGATCTGCAGCTACAAAAATGGTTCAACCAGTAGGCTTGCCTCAGGCACGTAAAGCATCCTTGGCCCGGTTTTTGGAGAAGCGAAAGGAAAGGGTGACGACAACATCACCATACTATAAATCCAAGACATCAACTGAATGCAGCACTCCTGGATCAGACAGTGTCAGTTTCTCCATGGACTTCTCTGGTTCCTGTCCTCAACAAGCCACTAACTAG 1173 0.4339 MEREFLSLSSKNGAWTTMKEDGANNPKHPVRGSGMQWSFSNKVSALPQFLSFKTSQGDGQRNTVLDPLASSGYMTISNKNAFDSNQKPFLGLNQKSFSIGMQPVNKHGMTVYPLQCSDAQSACVQEARRFSVSNQSNQVTPVLQSNVATTGLNMVNTAIKPQSLGSKFSGTPVSVLPSLGSIVGSTDLRNCSKSSGTPAQLTIFYAGSVCVYDDISVEKAQAIMLLAGNGSTPPNQNMTVSTAKLQPEIPLSSKDDGFKISQSYPSPSPLPSPLPKTSHASSQPRGGSSSNNELTIIRPVGPSTAPTKHLESPIIVGSVGSAATKMVQPVGLPQARKASLARFLEKRKERVTTTSPYYKSKTSTECSTPGSDSVSFSMDFSGSCPQQATN* 391
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops5g00377 390 MobiDBLite consensus disorder prediction 349 390 - -
Rops5g00377 390 MobiDBLite consensus disorder prediction 355 390 - -
Rops5g00377 390 ProSiteProfiles Tify domain profile. 194 229 IPR010399 -
Rops5g00377 390 Pfam Jas motif 333 358 IPR018467 -
Rops5g00377 390 MobiDBLite consensus disorder prediction 275 297 - -
Rops5g00377 390 PANTHER PROTEIN TIFY 4A-RELATED-RELATED 124 369 IPR040390 -
Rops5g00377 390 SMART tify_2 194 229 IPR010399 -
Rops5g00377 390 MobiDBLite consensus disorder prediction 248 297 - -
Rops5g00377 390 Pfam tify domain 197 228 IPR010399 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops5g00377 Rops-Chr5 6475300 6481043 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops5g00377 35 374 Tify Gene Family AT3G17860 39.106 9.80e-48 163
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Tify Rops5g00377 tify 1.7e-17 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops5g00377 K13464 - gmx:100807288 508.834