Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops5g00360 ATGGAAACTTCAGCACCAAAGTCTCTAATGGAGAATCTGTTAGGCCTTTTGAGGGTTCGAATCAAGCGTGGTGTCAACCTTGCTGTTCGTGATGTTCGTAGCAGTGACCCTTATGTTGTAATCAAGATGTACAATCAGAAACTTAAGTCTCGTGTGATTAAGAAGGATGTGAATCCTGAGTGGAATGAAGACCTTACTCTTTCTATTATAGATCCTAATCACCGAGTCACACTGACTGTGTATGACCATGACACTTTTAGCAAAGATGACAGAATGGGAGATGCAGAATTTGAGATCTCACCTTTCATAGAAGCCTTGAGGATGGACTTAACTGGCCTTCCAAGTGGTACTGTAATCAAAAGAATACAACCAAGCAGGCAAAACTGCCTGGCAGATGAGAGCTGTATCTATTTTAGCAATGGCAAAGTTGTCCAAGATATGATCCTTAGATTGCAAAATGTGGAATGTGGTGAAGTGGAAATCCAATTGCACTGGATTGATCTTCCTGGTTCTAAGGGTTTATAA 525 0.4095 METSAPKSLMENLLGLLRVRIKRGVNLAVRDVRSSDPYVVIKMYNQKLKSRVIKKDVNPEWNEDLTLSIIDPNHRVTLTVYDHDTFSKDDRMGDAEFEISPFIEALRMDLTGLPSGTVIKRIQPSRQNCLADESCIYFSNGKVVQDMILRLQNVECGEVEIQLHWIDLPGSKGL* 175
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops5g00360 174 ProSiteProfiles C2 domain profile. 1 112 IPR000008 -
Rops5g00360 174 Pfam C2 domain 15 101 IPR000008 -
Rops5g00360 174 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 11 100 IPR035892 -
Rops5g00360 174 Gene3D C2 domain 11 172 IPR035892 -
Rops5g00360 174 SMART C2_3c 16 111 IPR000008 -
Rops5g00360 174 CDD C2_ArfGAP 14 157 - -
Rops5g00360 174 PANTHER PROTEIN C2-DOMAIN ABA-RELATED 4 12 172 IPR044562 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops5g00360 Rops-Chr5 6305617 6307805 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops5g00360 47 174 C2H2 Transcription Factor Family AT1G70790 61.538 2.58e-53 164
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops5g00360 - - gmx:100810504 313.153
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops11g03508 11 67105066 67106968 Rops5g00360 5 6305617 6307805 ECH
Rops5g00360 5 6305617 6307805 Rops5g00360 5 6305617 6307805 ECH
Rops2g00054 2 975402 976492 Rops5g00360 5 6305617 6307805 PCT