LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Rops5g00353	ATGGGTGGTGGAGGAACATTCTCTGATACCATTCGTCGATTCTTTCATCGTCGCAATGCTATTAACTCTCACCTACTTGATAATCACAACAACAACAATGGCAACAACGTTAACAATGCCAACGTTAACAACAACAACAACCCCTCTTCCTTGAATCTTCTCAAAGTGCTTGAACGTTCCCATTTCATACCTTCTTCCATGGATCGTCAAAAAAAGGGTACATCAGAGGCAGAATTTTTTACTGAGTATGGAGAGGCAAGTCAGTACCAGATACAAGAAGTGGTTGGAAAAGGAAGTTATGGTGTCGTGGTTTCTGCCATTGACACTCATACTGGTGAAAAGGTTGCGATTAAGAAAATTAATGATGTTTTTGAGCATGTATCGGATGCCACACGGATCCTAAGAGAAGTTAAACTCCTTCGTTTGCTCCGACATCCTGATATAGTAGAAATTAAGCATTTAATGCTTCCTCCTTCACGAAGAGAGTTCAAGGATGTCTATGTTGTGTTTGAGTTGATGGAGTCTGACCTTCATCAAGTAATCAAGGCAAATGATGATCTTACTCCTGAGCACTACCAATTTTTCTTGTACCAACTTCTTCGGGGCCTGAAATATATACATACAGCAAATGTGTTTCATCGTGACTTGAAGCCAAAAAATATTCTAGCTAATGCTGATTGCAAACTAAAAATATGTGATTTTGGGCTTGCTCGAGTTTCATTTAATGAGGCTCCATCAGCTATATTCTGGACTGACTATGTTGCAACACGGTGGTATCGTGCACCTGAACTATGTGGTTCTTTTTTCTCGAAATATACCCCCGCAATTGATATTTGGAGCATTGGATGCATATTTGCAGAAATGCTCAGTGGCAAGCCATTGTTTCCTGGGAAAAATGTGGTCCACCAATTGGATCTCATGACTGATTTGCTTGGTACTCCTTCTGCTGAAGCCGTTTCAAGGATACGAAATGAGAAGGCTAGAAGGTACCTTAGTAGCATGCGAAAAAAGCAACCGATTCCATTCTCCAAAAAATTTCCAAATGCTGATCCATTGGCTCTTCATTTGCTGGAGCGATTAATTGCATTTGATCCTAAAGATCGTCCATCAGCTGAAGAGGCACTATCTGATCCTTATTTCCGTGGTTTGTCAAATGTGGATCGTGAACCGTCTACTCAACCCATTTCAAAACTTGAGTTTGAGTTTGAGAGAAGAAAATTGACCAAAGATGATGTTAGAGAGTTGATTTATCGAGAGATTTTAGAGTATCATCCCCAGATGCTCCAAGAATATCTTCGTGGTGGAGAGCTAACAAGCTTCATGTATCCGAGTGGGGTTGATCGGTTCAAGCGACAGTTTGCACATCTTGAGGAGCATTATGGCAAAGGTGAACGATGCTCTCCATTGCTGAGACACCATGCTTCCTTACCTAGAGAGCGAGTCCCTGCTCCCAAGGATGAAAATAATCAAAACAATGATTTTGAAAAGCCAACTGGATCAAATCTTCAGAGTCCTCCAGGGTCTGAAGTGATAGGTTCTGGTAACTCAGATGCACAAAATGGACCCTCCAAGCCAAACCACAGCGCGCGAAGCCTGTTGAAGAGTGCCAGCATTAGTGCTTCAAAATGTATAGATGTGAAGAAAAGTAAAGATCAAGAGGGGGAGCCAATTCCAGAGGTCAATGATGGGACAGTGGATGAGTTGACAGAGCAGGTTGCTGCTCTCCATGCTTAG	1734	0.4198	MGGGGTFSDTIRRFFHRRNAINSHLLDNHNNNNGNNVNNANVNNNNNPSSLNLLKVLERSHFIPSSMDRQKKGTSEAEFFTEYGEASQYQIQEVVGKGSYGVVVSAIDTHTGEKVAIKKINDVFEHVSDATRILREVKLLRLLRHPDIVEIKHLMLPPSRREFKDVYVVFELMESDLHQVIKANDDLTPEHYQFFLYQLLRGLKYIHTANVFHRDLKPKNILANADCKLKICDFGLARVSFNEAPSAIFWTDYVATRWYRAPELCGSFFSKYTPAIDIWSIGCIFAEMLSGKPLFPGKNVVHQLDLMTDLLGTPSAEAVSRIRNEKARRYLSSMRKKQPIPFSKKFPNADPLALHLLERLIAFDPKDRPSAEEALSDPYFRGLSNVDREPSTQPISKLEFEFERRKLTKDDVRELIYREILEYHPQMLQEYLRGGELTSFMYPSGVDRFKRQFAHLEEHYGKGERCSPLLRHHASLPRERVPAPKDENNQNNDFEKPTGSNLQSPPGSEVIGSGNSDAQNGPSKPNHSARSLLKSASISASKCIDVKKSKDQEGEPIPEVNDGTVDELTEQVAALHA*	578

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Rops5g00353	577	Gene3D	Transferase(Phosphotransferase) domain 1	175	403	-	-
	Rops5g00353	577	Pfam	Protein kinase domain	89	380	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Rops5g00353	577	MobiDBLite	consensus disorder prediction	476	492	-	-
	Rops5g00353	577	PANTHER	MITOGEN-ACTIVATED PROTEIN KINASE	88	430	-	-
	Rops5g00353	577	MobiDBLite	consensus disorder prediction	493	538	-	-
	Rops5g00353	577	ProSitePatterns	Protein kinases ATP-binding region signature.	95	119	IPR017441	GO:0005524
	Rops5g00353	577	ProSiteProfiles	Protein kinase domain profile.	89	380	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Rops5g00353	577	Gene3D	Phosphorylase Kinase; domain 1	105	426	-	-
	Rops5g00353	577	FunFam	Mitogen-activated protein kinase	404	426	-	-
	Rops5g00353	577	MobiDBLite	consensus disorder prediction	25	49	-	-
	Rops5g00353	577	ProSitePatterns	MAP kinase signature.	124	227	IPR003527	GO:0004707\|GO:0005524\|GO:0006468
	Rops5g00353	577	FunFam	Mitogen-activated protein kinase	78	183	-	-
	Rops5g00353	577	CDD	STKc_TDY_MAPK	88	425	-	-
	Rops5g00353	577	SUPERFAMILY	Protein kinase-like (PK-like)	85	385	IPR011009	-
	Rops5g00353	577	SMART	serkin_6	89	380	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Rops5g00353	577	FunFam	Mitogen-activated protein kinase	175	403	-	-
	Rops5g00353	577	MobiDBLite	consensus disorder prediction	476	568	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Rops5g00353	Rops-Chr5	5901726	5907866	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Rops5g00353	76	577	MAP Kinase Gene Family	AT3G18040	81.693	0.0	833

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	CMGC_MAPK	Rops5g00353		Pkinase	1.1e-67	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Rops5g00353	-		-	gmx:100776784	937.947