Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops5g00352 ATGGACCCATCATCGATCTCTTCACCTGCAGCACCTTCTCCGGTTCCGGCACCGTCTCCGGCGACCACCGCCGTGCCTTTCACCGCCGAACCAAACAGCCACCCACCAGCTGCAACTTCAGCACCACCATCTAACCACCCACCTTATGCTGAGATGATATACACAGCAATCGAGGCACTGAAAGAGAAGAACGGTTCAAGCAAGAGAGCAATAGGGAAGTATATAGAGCAAGTGTACAAGGAACAGCTTCCACCAACGCATGATGCTTTGTTGACTCATCACTTGAAGCGATTGAAGAACAATGGGATGCTTGTTATGTTCAAGAAATCTTACAAGCTTCCTAGATCTGCTCCTGTTTCTGCTTCTCCTGCTGCTGCTTCTTCTGGGTCTGCTACACCAAGGCCCAGGGGCAGGCCTCGTAAGGCCCAGGCCCAAGGAGATGCTCAGGTCCAGAACCTTCCCCCTCCTCAGCAAGTTCCTGTTGGGGATGGGGGAAACAACAACATCAACGCTCAGCAGAATGCGGAGCCCGTGTGGGCCGCGCTTGGGCTTTCGGATGAGCCTGTGCCTGTTCAAGTGCAATCACCTGAGGGTAGCAAGAGAGGCCCGGGCCGTCCGAGGAAGAGTGTTGTTCCTGGTCAAGTGGGACAGCCAAGCCCAGTTGGGGTCTCTGCTGGGAGGAGGGGCCGCCCACCTGGGTCTAAGTCCAAGAAGAAACTGGGCAGGCCCGCTAAGAGTGCAACGCCTGTGGCTGGGGCTGTTTCTGGTGGGTCCAAGAGACGCCCGGGCCGGCCGCCAAAGAATCAGCAGCCGCAGCCGACTGCGATACCCTTTGCTCTACCTGCTCCTCCGGTGGCGGCAGTGCCGGCTGAGCAAGGTGCCGGTGGGGCTTTGACCCCTGCTGCTTCCGGGGTTTCAAGGCCCAGAGGAAGGCCCAGGAAAAATGCTGCTACTGCTGTGGCTGCTGCTATTGTTGCTGTGGGCCGAGGAAGGGGGCGGGGACGTGGACGTGGACGTGGTGGTGGCCGGGGACGAGGAAGAGGAAGAGGACGTGGAGGATTAGCTGCTCAGCCCAAAATTGGAAGAAGGCCTGTGGGCCGCCCAAGGAAGGGAACAACTTCTACTGGTACCGCACAAAATGCTGTTAATGAAGATCTCAAGAAGAAACTTGATCACTTTCAAATCAAAGTCAAGGAATCTCTTGCAGTGCTCAAGCCTCATTTTAACCATGAAAGTCCAGTCACTGCAATTGCAGCAATCCAAGAGTTGGAAGTACTAGGAACCATGGACCTCAATGCACCATTCAAGGATGAAACACTTCCACAGCAACAGCAGCTGCCGCCACAAGAGCCACCACAGCAACAGCTACTACCCCAACAGCAGCAGCTGCCACCACAGCAACAAGGACAACAACTGCTGCCACAGCAACAGGCATATCAACAGCAATTTCCCCAGTTTCATCTGCAGCAGTACCCCCAGCAGTACCAGCAACAACAGCCACAGCTATATCAGCAGCAGCCTGCGCCGCCGCCGCAGCAGCAACAGTTTCATCCTTAG 1557 0.5575 MDPSSISSPAAPSPVPAPSPATTAVPFTAEPNSHPPAATSAPPSNHPPYAEMIYTAIEALKEKNGSSKRAIGKYIEQVYKEQLPPTHDALLTHHLKRLKNNGMLVMFKKSYKLPRSAPVSASPAAASSGSATPRPRGRPRKAQAQGDAQVQNLPPPQQVPVGDGGNNNINAQQNAEPVWAALGLSDEPVPVQVQSPEGSKRGPGRPRKSVVPGQVGQPSPVGVSAGRRGRPPGSKSKKKLGRPAKSATPVAGAVSGGSKRRPGRPPKNQQPQPTAIPFALPAPPVAAVPAEQGAGGALTPAASGVSRPRGRPRKNAATAVAAAIVAVGRGRGRGRGRGRGGGRGRGRGRGRGGLAAQPKIGRRPVGRPRKGTTSTGTAQNAVNEDLKKKLDHFQIKVKESLAVLKPHFNHESPVTAIAAIQELEVLGTMDLNAPFKDETLPQQQQLPPQEPPQQQLLPQQQQLPPQQQGQQLLPQQQAYQQQFPQFHLQQYPQQYQQQQPQLYQQQPAPPPQQQQFHP* 519
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops5g00352 518 PANTHER HISTONE H1 29 270 - -
Rops5g00352 518 MobiDBLite consensus disorder prediction 504 518 - -
Rops5g00352 518 MobiDBLite consensus disorder prediction 455 503 - -
Rops5g00352 518 Pfam linker histone H1 and H5 family 46 108 IPR005818 GO:0000786|GO:0003677|GO:0006334
Rops5g00352 518 SMART h15plus2 43 110 IPR005818 GO:0000786|GO:0003677|GO:0006334
Rops5g00352 518 PRINTS AT-hook-like domain signature 200 210 IPR017956 GO:0003677
Rops5g00352 518 PRINTS AT-hook-like domain signature 257 268 IPR017956 GO:0003677
Rops5g00352 518 PRINTS AT-hook-like domain signature 304 314 IPR017956 GO:0003677
Rops5g00352 518 MobiDBLite consensus disorder prediction 332 346 - -
Rops5g00352 518 FunFam Histone H1.2 42 123 - -
Rops5g00352 518 MobiDBLite consensus disorder prediction 434 518 - -
Rops5g00352 518 Gene3D - 42 125 IPR036388 -
Rops5g00352 518 ProSiteProfiles Linker histone H1/H5 globular (H15) domain profile. 45 115 IPR005818 GO:0000786|GO:0003677|GO:0006334
Rops5g00352 518 MobiDBLite consensus disorder prediction 118 384 - -
Rops5g00352 518 MobiDBLite consensus disorder prediction 1 48 - -
Rops5g00352 518 MobiDBLite consensus disorder prediction 145 175 - -
Rops5g00352 518 SMART AT_hook_2 306 318 IPR017956 GO:0003677
Rops5g00352 518 SMART AT_hook_2 238 249 IPR017956 GO:0003677
Rops5g00352 518 SMART AT_hook_2 133 145 IPR017956 GO:0003677
Rops5g00352 518 SMART AT_hook_2 362 374 IPR017956 GO:0003677
Rops5g00352 518 SMART AT_hook_2 200 212 IPR017956 GO:0003677
Rops5g00352 518 SMART AT_hook_2 225 237 IPR017956 GO:0003677
Rops5g00352 518 SMART AT_hook_2 259 271 IPR017956 GO:0003677
Rops5g00352 518 MobiDBLite consensus disorder prediction 266 284 - -
Rops5g00352 518 CDD H15 43 114 IPR005818 GO:0000786|GO:0003677|GO:0006334
Rops5g00352 518 SUPERFAMILY "Winged helix" DNA-binding domain 42 123 IPR036390 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops5g00352 Rops-Chr5 5853840 5859099 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops5g00352 52 121 Single Myb Histone (SMH) Gene Family AT1G49950 42.857 3.73e-08 53.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops5g00352 - - lang:109358509 355.14