Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops5g00344 ATGTGGATGGTGGGTTACAATGAAGGTGGTGAGTTCAACATGGTTGATGTTTCATTCAGTGGAAGGAAACTCAGACCTCTCATGCCAAGGCCAATGACTTCTTCTCCTAACAATGCTTCAACAACAACAACCACTCCTAGCTTAAGACACGTTCATGGCAATGATTTCTTTTCACAGTATCATTATCACCATCTGGCAACAGTGGCAGATCAGAACAAGAGAGAACAATGCAATGCTCTACCAGTTGTGGTGAGTTCAAGGTGGAATCCTACCCCGGAGCAACTAAGATCCCTTGAAGAGTTGTATAGAAGAGGGATAAGAACACCATCTGCGGAGCAAATCCAACACATAACTGCACAGCTTAGAAGATTTGGTAAAATTGAAGGGAAGAATGTTTTCTATTGGTTTCAGAATCACAAAGCTAGGGAAAGGCAAAAGCGCCGCCGTCAAATGGAATCAGCTACTGATCAAGGTCACCACCATCAACATGATTTTGATAATCCAGAGAAGAGGGATTTAGCTGCAAGTAGGAAAGCGTTTGAAGTTGAACAGACCAAGAACTGGGAACCCTCTACAAACTGCAGTACTATTGCAGAGGAATCTGTTTCAATACAAAAGGCAGCAAAAGCAGTGGTTGCAGAATGTAGAACAGATGGATGGATCCAATTCGATGAAGGAGAATTTCAACAAAGAAGAAACTTTTTGGAAAGGAATGCCACGTGGCACATGATGCAGTTATCTTGTCCTCCTCCTTCTGCACCTGCCACCCACCTCATAAACACCCTTCCTAATGCTTCTGCAGCTAGTTGTAGTATGGCCACTACTACCACAGTAACAACAAGAAAAATGGACCCAAAGCTCATTAAGACCCTTGATCTCAGCTTTACTATTTCACCTCAAAGAGAAAACGGTGTTATTAATATTATCCACAGAAACAGCATTGAAGATGATGATAACTGTGTGGAATCTCAAACCACCCTTCAACTTTTCCCATTACGTAGTGGTGATGGCAGCAGTGATAACATTAACGATAAAGAGACAGGGATATCAGCTTCAGCAATGAATGCCAACTTGACCCCAAGTCAGTTTTTTGAGTTCCTTCCATTGAACTGA 1113 0.4232 MWMVGYNEGGEFNMVDVSFSGRKLRPLMPRPMTSSPNNASTTTTTPSLRHVHGNDFFSQYHYHHLATVADQNKREQCNALPVVVSSRWNPTPEQLRSLEELYRRGIRTPSAEQIQHITAQLRRFGKIEGKNVFYWFQNHKARERQKRRRQMESATDQGHHHQHDFDNPEKRDLAASRKAFEVEQTKNWEPSTNCSTIAEESVSIQKAAKAVVAECRTDGWIQFDEGEFQQRRNFLERNATWHMMQLSCPPPSAPATHLINTLPNASAASCSMATTTTVTTRKMDPKLIKTLDLSFTISPQRENGVINIIHRNSIEDDDNCVESQTTLQLFPLRSGDGSSDNINDKETGISASAMNANLTPSQFFEFLPLN* 371
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops5g00344 370 SMART HOX_1 83 150 IPR001356 GO:0003677
Rops5g00344 370 MobiDBLite consensus disorder prediction 147 169 - -
Rops5g00344 370 Gene3D - 84 146 - -
Rops5g00344 370 FunFam WUSCHEL-related homeobox 4 85 152 - -
Rops5g00344 370 PANTHER WUSCHEL-RELATED HOMEOBOX 1-RELATED 71 366 IPR044555 GO:0003700|GO:0099402
Rops5g00344 370 MobiDBLite consensus disorder prediction 31 47 - -
Rops5g00344 370 ProSiteProfiles 'Homeobox' domain profile. 91 146 IPR001356 GO:0003677
Rops5g00344 370 CDD homeodomain 87 147 IPR001356 GO:0003677
Rops5g00344 370 MobiDBLite consensus disorder prediction 27 47 - -
Rops5g00344 370 Pfam Homeodomain 86 145 IPR001356 GO:0003677
Rops5g00344 370 SUPERFAMILY Homeodomain-like 86 152 IPR009057 -
Rops5g00344 370 MobiDBLite consensus disorder prediction 143 169 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops5g00344 Rops-Chr5 5771321 5773433 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops5g00344 1 369 Wox Gene Family AT3G18010 39.364 1.44e-65 210
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-WOX Rops5g00344 Homeodomain 9.3e-19 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops5g00344 - - gmx:100819541 506.908