Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops5g00332 ATGAGAAAGTCTTGTCGTGAGAAGGAAGTAACTAATAAAGTTAAAGGATATTGGTCCAAGCAAGAGGACCTGAAACTCATTGACTACATACAAAAACATGGTGAAGGTCGTTGGCGTTCAATTTCTCAGGGTGCAGGGTTGCGTCGCTGTGGCAAAAGCTGCAGGTTGAGATGGCTAAACTATCTAAGGCCTGACCTTAAACATGGAGACTTTGGTGAAGATGAAGAGGACTTAATCATCAGGCTTCATTCCCTTCTAGGTGATCGGTGGTCACTGATAGCTGGAAGATTACCAGGAAGGACAGATAATGAGATCAAGAATTACTGGAACTCTCACATTAAAAAAAAGTTAATAAAGATGGGTTATGATCCCAATAATCATCATTACTTTAATGGCTTCAATGTTGGAAGTGGAAAATCATTTGACCACAAGGAAGATGGGACTAGTAGGAAGCATGTAAGCTTGCATGGACTTCACGGTCAGATCAATGATTCCACAAGTGGAAAAGAGGACAGCCTTCACAATTTCCCGGACCTGAATCTTGACCTTACTTACACTTAG 561 0.4135 MRKSCREKEVTNKVKGYWSKQEDLKLIDYIQKHGEGRWRSISQGAGLRRCGKSCRLRWLNYLRPDLKHGDFGEDEEDLIIRLHSLLGDRWSLIAGRLPGRTDNEIKNYWNSHIKKKLIKMGYDPNNHHYFNGFNVGSGKSFDHKEDGTSRKHVSLHGLHGQINDSTSGKEDSLHNFPDLNLDLTYT* 187
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops5g00332 186 ProSiteProfiles Myb-like domain profile. 63 113 IPR001005 -
Rops5g00332 186 PANTHER TRANSCRIPTION FACTOR MYB8-RELATED-RELATED 1 145 - -
Rops5g00332 186 FunFam MYB-related transcription factor 14 67 - -
Rops5g00332 186 CDD SANT 18 62 IPR001005 -
Rops5g00332 186 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 12 62 IPR017930 -
Rops5g00332 186 FunFam MYB transcription factor 69 130 - -
Rops5g00332 186 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 63 117 IPR017930 -
Rops5g00332 186 Pfam Myb-like DNA-binding domain 15 62 IPR001005 -
Rops5g00332 186 Pfam Myb-like DNA-binding domain 69 112 IPR001005 -
Rops5g00332 186 ProSiteProfiles Myb-like domain profile. 10 62 IPR001005 -
Rops5g00332 186 SUPERFAMILY Homeodomain-like 12 109 IPR009057 -
Rops5g00332 186 Gene3D - 70 129 - -
Rops5g00332 186 MobiDBLite consensus disorder prediction 141 171 - -
Rops5g00332 186 SMART sant 14 64 IPR001005 -
Rops5g00332 186 SMART sant 67 115 IPR001005 -
Rops5g00332 186 Gene3D - 14 67 - -
Rops5g00332 186 CDD SANT 73 113 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops5g00332 Rops-Chr5 5627701 5629645 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops5g00332 2 183 MYB Transcription Factor Family AT4G38620 50.000 1.10e-61 191
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Rops5g00332 Myb_DNA-binding 9.3e-17 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops5g00332 K09422 - zju:125422401 241.121