Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops5g00330 ATGGCATCCTCCCCAAATCTCCTCAGTGGGTATCGATTTCCCATCACTGTTGAAGTGATGAATGATGGTCGAAAGGGACATGTGCCATGGCGTATAGCTGCGGAATTCAGGCTTCTAATCGAAAGAAATCCTACTATCAGTACTACTGATGGGAATGTCTTTGAGTATTATGGAGATTCGTATTTCGGATTCAATGAGAAAGACCGAGAAGGATATGGTACCATTCAAACTCGAACCAAAAGGATCAAAACCGACGAAGATCAAAACCAATCTGACACGAAGGAGGTATTTGGTCACCTAAGACTGACTGCTTATAGTACAACAAACAACCATCAGAATCTGCCTTCATCCTTTGTTCAAGCCTGCTTGAACAAAAAATGTAAATATGTGCTGCTGGAGATTGAGGACAGTAGAATTTGGCATTTGGGACTTTATGCACCAGAAACAAGGCCGAATACAGCACGATTCTCTTCAGGGTGGAAGATGTTTTGTGATGAGCTGGAGTTGAAGGCAGAGGACCGTATCATCCTCAAAATACATGACAGATCAAAGAACCATCTCCTTGCTCACATTGAACGTCTGTGA 585 0.4274 MASSPNLLSGYRFPITVEVMNDGRKGHVPWRIAAEFRLLIERNPTISTTDGNVFEYYGDSYFGFNEKDREGYGTIQTRTKRIKTDEDQNQSDTKEVFGHLRLTAYSTTNNHQNLPSSFVQACLNKKCKYVLLEIEDSRIWHLGLYAPETRPNTARFSSGWKMFCDELELKAEDRIILKIHDRSKNHLLAHIERL* 195
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops5g00330 194 CDD B3_DNA 102 193 IPR003340 GO:0003677
Rops5g00330 194 Gene3D - 76 194 IPR015300 -
Rops5g00330 194 ProSiteProfiles B3 DNA-binding domain profile. 97 194 IPR003340 GO:0003677
Rops5g00330 194 PANTHER B3 DOMAIN-CONTAINING PROTEIN REM-LIKE 3-RELATED 82 183 IPR039218 -
Rops5g00330 194 SUPERFAMILY DNA-binding pseudobarrel domain 99 191 IPR015300 -
Rops5g00330 194 Pfam B3 DNA binding domain 102 191 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops5g00330 Rops-Chr5 5597940 5598855 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Rops5g00330 B3 1.8e-08 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops5g00330 - K03734 hsyr:120140694 51.2174