Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops5g00328 ATGGGCATCAAGGATCTTCTTAGATTCATGAAACCTTACACTGAACCTGTTCACATCAAGAACTACACTGGCAAACGCGTGGGTATTGATGCATATTCATGGCTTCACAAGGGGGCTTATTCATGTAGTATGGAGCTTTGTCTTGATTCTGATAGTGAAAGGAAATTGCGGTACATTGAATACTTTATGCATCGAGTTAACTTGCTTCGCTACTATAAGATAACCCCAGTTGTGATTTTTGATGGTTGCAATGTTCCTTGCAAAGCAGCAACTGAGGAAGAGAGAAACAGAAAAAGAAGTGCTAATCGTGAGTTGGCTATGGCAAAGCTTAAAGAAGGGAATGTTGGTGCAGCTTCAGAGCTCTTCCAGAGAGCAGTGAATATTACTCCCCTAATGGCACATAAACTAATTCAGACTCTGAAATCAGAGAACATTGAGTTTGTTGTAGCTCCATATGAAGCAGATGCTCAGTTAGCATATATTTCCAACCTTGAAGCAGAAAAGGGTGGAGTTGCAGCTGTGATCACGGAAGATAGTGATCTGATAGCATATGGCTGTCCAGCTATTATTTTTAAGATGGACCGTCTTGGGAATGGTGAAAGAATAGAGTTAGAGAAGGTTTTTTCTGCTGAATCATGTAAACCTTCATTTCGAGGTTTTGATATGAAACTCTTCACAGGTATGTGTGTCTTAGCTGGCTGTGATTTTCTTCCATCTGTTCCTGGAATTGGTGTTGCTCGAGCTCATGCCTTAGTTTCCAAGTATCGGAACCTAGATCGTATCTTGTCTGTTCTCAAGTTTGAGAAAGGTGACCTAATGCCTGAAGATTATGCCAAATCCTTCAAAGAGGCAGTTGCAGTCTTTCAGCATGCTCGAATATATGACGCCAATACTAAAGAGCTCAAGCACATGAAGCCTCTTCCACAAAATTTTCTTGAGTCACTCGATGGAAAGCTTGATTTTTTGGGACCAGAAATTCCCCCAACTATAGTCACTGCAATAGCTGAAGGAAACTTGAATCCATCAACTAAAGAAGCCTTTGATAAGTCTGAATGTTCTAGGTTTTCTCTGAACTCCCTTGATCAAATCCAGAAAGGTGAAGTTCATGCACCAATTAGACAGGAGAACTGCTTTTCAGTCTTTGGCTCCCATAATACCAGCAAAAATAGTACAGTGACAATACTCTCAGATGAAGATAAGTATTCCAATGAAGCATTGGCACTTCAGAAACTAATCATGCCACTGGGAACAAATGGAACAGTAAAAAAGACTATTGCATCTGATGATACTCCTTTGAAGGTTCCTGATAACAACCCTTTCAGGATAAGAAAAACTGAGGAAGTGTATTTGGTTGAGACAGAGGACATGGCTGAAAAAGTTTCTATTGTCAAAGGTGTGGAATATATTGACATGTGCACATCTCCAGATAACTCTCAAGAAGAGGGGTCTGAAAATCTCTCTAGGAAAAGGAAATTTCAGAACATTAGCTCAGATAAAATGGAAGCCAGTGATGAACAGGTTTCAGGAGTGACTGAAGTAGAAAATTCTGATGCTTTATGCTTGACTGTGGAATCCCAAGAAAGTGTAAATTCTGAGACTAGGAAGAGTGCTGATTTGAAAGGAAAAAGTGGAAGTGAAAAGAAATCCAAGAAAACAGGGAGTATCGGCAGAACTATTCTGAATTTCTTTTCTAGAGTGTAA 1701 0.3986 MGIKDLLRFMKPYTEPVHIKNYTGKRVGIDAYSWLHKGAYSCSMELCLDSDSERKLRYIEYFMHRVNLLRYYKITPVVIFDGCNVPCKAATEEERNRKRSANRELAMAKLKEGNVGAASELFQRAVNITPLMAHKLIQTLKSENIEFVVAPYEADAQLAYISNLEAEKGGVAAVITEDSDLIAYGCPAIIFKMDRLGNGERIELEKVFSAESCKPSFRGFDMKLFTGMCVLAGCDFLPSVPGIGVARAHALVSKYRNLDRILSVLKFEKGDLMPEDYAKSFKEAVAVFQHARIYDANTKELKHMKPLPQNFLESLDGKLDFLGPEIPPTIVTAIAEGNLNPSTKEAFDKSECSRFSLNSLDQIQKGEVHAPIRQENCFSVFGSHNTSKNSTVTILSDEDKYSNEALALQKLIMPLGTNGTVKKTIASDDTPLKVPDNNPFRIRKTEEVYLVETEDMAEKVSIVKGVEYIDMCTSPDNSQEEGSENLSRKRKFQNISSDKMEASDEQVSGVTEVENSDALCLTVESQESVNSETRKSADLKGKSGSEKKSKKTGSIGRTILNFFSRV* 567
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops5g00328 566 ProSitePatterns XPG protein signature 2. 144 158 IPR019974 GO:0016788
Rops5g00328 566 SMART xpgineu 141 213 IPR006086 GO:0004518
Rops5g00328 566 Pfam XPG I-region 144 235 IPR006086 GO:0004518
Rops5g00328 566 SUPERFAMILY PIN domain-like 2 235 IPR029060 -
Rops5g00328 566 FunFam Exonuclease 1, putative 1 214 - -
Rops5g00328 566 Pfam XPG N-terminal domain 1 100 IPR006085 GO:0004518
Rops5g00328 566 Gene3D - 1 213 - -
Rops5g00328 566 CDD H3TH_FEN1-like 225 295 - -
Rops5g00328 566 Coils Coil 91 111 - -
Rops5g00328 566 Gene3D - 219 291 - -
Rops5g00328 566 SUPERFAMILY 5' to 3' exonuclease, C-terminal subdomain 220 349 IPR036279 -
Rops5g00328 566 SMART xpgn3 1 102 IPR006085 GO:0004518
Rops5g00328 566 MobiDBLite consensus disorder prediction 531 553 - -
Rops5g00328 566 SMART HhH_4 222 255 IPR008918 GO:0003677|GO:0003824
Rops5g00328 566 MobiDBLite consensus disorder prediction 522 553 - -
Rops5g00328 566 FunFam exonuclease 1 218 291 - -
Rops5g00328 566 CDD PIN_EXO1 1 208 IPR044752 GO:0046872
Rops5g00328 566 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 24 38 IPR006084 -
Rops5g00328 566 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 76 95 IPR006084 -
Rops5g00328 566 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 140 157 IPR006084 -
Rops5g00328 566 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 225 240 IPR006084 -
Rops5g00328 566 PANTHER FLAP ENDONUCLEASE FAMILY MEMBER 1 546 IPR006084 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops5g00328 Rops-Chr5 5572522 5578812 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops5g00328 1 315 Core DNA Replication Machinery Family AT5G26680 23.636 3.15e-12 66.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops5g00328 K10746 - gmx:100817932 875.93