Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops5g00326 ATGTCTCCACGTCCCAACAAGTACGAACAAGACAACCACTATGCTACGGAAGATGAGTATGAAGAAGATCACCATTCCATCACCGATGATCATGGCGATGTAGTACTCAAGGAAGACATGGCCGCTCTGGCACAATCCTGCAAGGTCGCTGTTCCCAAAGAAGACCCACTATTGGCTGCCGGAGACACTGACTCAGACTCCGATGATGAATGGAGTGATAACGAGTGTGTTAAGAGAGTGCAGAGTCTCTGCAAATCTTCTACTTGTCTTCCACAGACTGACTCTGACTCCAGTGATGAAAGAAGTGATATGGAATGTCTTAAGAGAGTGCAGAGTCTCTACAATCCTTCAACTTTGACAACTTCAACTATGATCACTGTCTCCGACAGTGATGACTCTGCAGATGACTTTGAGGATGCCCATGCCATTCTCAAACGATTTTCCAACTACAACGAAGGTAATCTTGAAGACAGAACAAAAACATTGACCAAAGGAGACAAGGCCTCAAGCCTAGGCTGTGAGGCGGACATTGCTAGCAGCTCCCTCTCTTCCAAATCATATGCTGCTGGTGAATCATGCCCTGTTCCTCAACATCCTGATACCACCAATTTGGTGACTGGTGACATCAAGGTGCTGCATGGTGATTTTGTTGATAGTTATGAACCTGATGCTGGTGTTGAATCATGCCCTGTTCCTCAAAATCCAAACACCACCAATTTGGTGACTGGTGACATCAAAATGCAGTATGATGAATTTTTTGTTAGTTATGAACCTGATATTGGTGTTGAATCATGCCCTGTTCCTCAAAATCCTTATACTACCAATTTGGTGATCGGTGACACCGAGGTGCAGCTTGGTGAATTTTTTGATAGTTATGAATCTGATGTTGGTGCTGAATCATGCCCTGTTCCTCAAAATCCTTACACCACCAATTTGATGACCGATGACACCGAGATACGGCTTGGTGATTTTGTTGATAGTTATGAACCTGATGCTGGTGCTGAATCATGCCCTGTTCCTCAAAATCCTGATACCACCAATTTGGTGACTAGTGACATAAAAATGCAGCATGATGATTTTGTTGATAGTTATGAACCTGATGCTGGTGCTGAATCATGCCCTGTTCCTCAACATACTGATACCACCAATTTGGTGACTGGTGACATCAAAATGCAGCATGATGATTTTGTTGATAGTTATGAACCTGATGCTGTTGCTGAATCATGCCCTGTTACTCAAAATCCTGATACCACCAATTTGGTGACTGGTGACACTGAGACGCAGCTTGGTAATTTAATTGACAGTCATGAACCTGATGCCGGTGAGTCATCCGGCTTACCACAAAAAAGATCAAGGCTTCCTCCGGCAGTTAGTTCTTTAGTTGATGCCATCAACCAGAATAGGGCTCTCCAGAAATTTCATAGAAGTAAGTTGATCGGGCTTGAAGCAAAAATTGAGGAAAACAAACAGATAAGGAACAAAGTTAAAGTCCTTAAGGACTTCCAGATTACGTGCAGTAGAAGAACAGGGAGGGCTTTATCACTGAAAAAGGATCCTCGTGTACAGTTGATATCAGCACGAAAGAGTCCTACTCCTGATAACACAAAGGGTAAGAATAAAAAGGAATCTCCAATGTGTTATGGCCCACCCGAGAATTCTCGAGTTGCTAATTATAAGATGGTATTGGAAAGATTTCCGGTTTCAATAGATCGGAAAAAATGGTCTGATGTGGAAAGGGAAAATCTTTCAAAGGGAATTAAGCAACAATTCCAAGAAATGTTGCTTCAAATTTCAGTGAATAGAGTAAGTTTGGAGTGCTCCAGTGGAGATGCAAATCACATGGATAACATAATTGCATCTGTTAAAGATATTGAAATCACACCAGAGAGGATCAGAGAATTTTTACCTAAAGTTAATTGGGATCAGTTGGCTTCTATGTATCTTCCTGGGCATACTGGAGCTGAATGTCAATCAAGGTGGTTGAATTGTGAAGATCCTTTGATCAACCATGGCCCATGGACTAGTGAGGAGGACAAGTCTCTTATGATTGTTGTCCAAGAAAAGGGCATTAGGAACTGGTTTGATATTGCTGTGTCATTGGGTACAAATAGGACTCCGTTTCAATGTTTGGCTCGATACCAAAGGAGCTTAAATCCTTCAATGTTGAATAGTGAATGGACTGAGGAAGAAGATGCTCAACTTAGAGATGCTGTTGCACATTTTGGTGAGAACAATTGGCAGTCTGTGGCTTCTGTTTTAGAACGGCGGACAGGAGCCCAATGCTCAAATAGGTGGAGAAAATCACTTTGTCCAGTGAGGAAAGGGACCTTTACTCTAGAGGAGGATAAACGCCTAACAGTAGCAGTCAGGCTTTTTGGACAGAAATGGAATCAAATAGCTAAATATGTTCCTGGTCGTAGCCAATCTCAGTGTAGGGACAGATACCTTAATAGCTTGGATCCTTCTTTGAAATGGGGTGGATGGACTGAGGAAGAGGATTCAAGATTAGCAGCTGCAATTATCAAGCATGGATTTTGCTGGACTAAGGTGGCTGAAGATTTACCTCCCCGTACCGATTCTCAATGCCGAAAGAGATGGAAGGTGTTACATCCTGACCAATTTCTGGTTGTTCAGCAAGCAAGAAAGAAGCAAAAGTGTCATATTGCTAGTAACTTTGTTGATCGAGAATCTGAACGCCCTAACTTTACACCAAATGACTTTCTTCCTATAGAAATGTTAGCTTCATCATCTAATGCTGATGCTGCCAGTCTTCAAAGGAAGCAGAAGAAGAAGTCAAGCAATGTTCCCAAGAAAAGGAGGTCCAACAAACATGCAGAGAAGGCTCGAATTGCTCCCAAGGAAGTAAAAGATGTAGCATGTAATGACAAGGTCAAGATTAGTATTGAGAGTTCAGAAAGTCAAGATTGGGACATGACTCTTGCATCCTTTCTACACAAAAAATCCAAGAAGGGACGATCTAAAAGTATCAAAATTGTGAGTCAGGATTCCTTTTCCTCTTGGATAACAACTGTTTCTAAGCAGGTTGAAAATCAAATCCAATCTGGTGGTGAGCATGAAGGGTCATGTGGTACAGGTGGAACTAACGATTTGTTCATGCTGCAGATTGATGCTTCTAAAGGACAAGGGGGAAAACCAGAAGATGGAGATGCCGTTAAAAATTCAGACGATGAAAATAATTTGACAAGTGATGATGATGATGACATGACTATTGCATGTCGTAACCGAGAAGGCGAAATGGAAAGATTGACCAAGGGGGACATTGCGAACAACTCTCTCTCTTCCAAATCAGATGCTGCTGGAGAATCATGCCCTGTTTCTCAAAATCCTAATATCACCAATTTGGTGACTATTGACATCAAGATGCAGCATGTTGTTGATAGTTATGAACCTGATGCCCTGTTCCTCGAAATAATGATACCACCAATTCGTTGA 3453 0.4202 MSPRPNKYEQDNHYATEDEYEEDHHSITDDHGDVVLKEDMAALAQSCKVAVPKEDPLLAAGDTDSDSDDEWSDNECVKRVQSLCKSSTCLPQTDSDSSDERSDMECLKRVQSLYNPSTLTTSTMITVSDSDDSADDFEDAHAILKRFSNYNEGNLEDRTKTLTKGDKASSLGCEADIASSSLSSKSYAAGESCPVPQHPDTTNLVTGDIKVLHGDFVDSYEPDAGVESCPVPQNPNTTNLVTGDIKMQYDEFFVSYEPDIGVESCPVPQNPYTTNLVIGDTEVQLGEFFDSYESDVGAESCPVPQNPYTTNLMTDDTEIRLGDFVDSYEPDAGAESCPVPQNPDTTNLVTSDIKMQHDDFVDSYEPDAGAESCPVPQHTDTTNLVTGDIKMQHDDFVDSYEPDAVAESCPVTQNPDTTNLVTGDTETQLGNLIDSHEPDAGESSGLPQKRSRLPPAVSSLVDAINQNRALQKFHRSKLIGLEAKIEENKQIRNKVKVLKDFQITCSRRTGRALSLKKDPRVQLISARKSPTPDNTKGKNKKESPMCYGPPENSRVANYKMVLERFPVSIDRKKWSDVERENLSKGIKQQFQEMLLQISVNRVSLECSSGDANHMDNIIASVKDIEITPERIREFLPKVNWDQLASMYLPGHTGAECQSRWLNCEDPLINHGPWTSEEDKSLMIVVQEKGIRNWFDIAVSLGTNRTPFQCLARYQRSLNPSMLNSEWTEEEDAQLRDAVAHFGENNWQSVASVLERRTGAQCSNRWRKSLCPVRKGTFTLEEDKRLTVAVRLFGQKWNQIAKYVPGRSQSQCRDRYLNSLDPSLKWGGWTEEEDSRLAAAIIKHGFCWTKVAEDLPPRTDSQCRKRWKVLHPDQFLVVQQARKKQKCHIASNFVDRESERPNFTPNDFLPIEMLASSSNADAASLQRKQKKKSSNVPKKRRSNKHAEKARIAPKEVKDVACNDKVKISIESSESQDWDMTLASFLHKKSKKGRSKSIKIVSQDSFSSWITTVSKQVENQIQSGGEHEGSCGTGGTNDLFMLQIDASKGQGGKPEDGDAVKNSDDENNLTSDDDDDMTIACRNREGEMERLTKGDIANNSLSSKSDAAGESCPVSQNPNITNLVTIDIKMQHVVDSYEPDALFLEIMIPPIR* 1151
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops5g00326 1150 Gene3D - 724 772 - -
Rops5g00326 1150 ProSiteProfiles Myb-like domain profile. 718 769 IPR001005 -
Rops5g00326 1150 MobiDBLite consensus disorder prediction 431 452 - -
Rops5g00326 1150 CDD SANT 776 819 IPR001005 -
Rops5g00326 1150 CDD SANT 725 769 IPR001005 -
Rops5g00326 1150 MobiDBLite consensus disorder prediction 10 31 - -
Rops5g00326 1150 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 718 773 IPR017930 -
Rops5g00326 1150 SUPERFAMILY Homeodomain-like 721 815 IPR009057 -
Rops5g00326 1150 MobiDBLite consensus disorder prediction 1049 1065 - -
Rops5g00326 1150 PANTHER SNRNA-ACTIVATING PROTEIN COMPLEX SUBUNIT 4 29 996 - -
Rops5g00326 1150 MobiDBLite consensus disorder prediction 924 953 - -
Rops5g00326 1150 MobiDBLite consensus disorder prediction 526 550 - -
Rops5g00326 1150 MobiDBLite consensus disorder prediction 1093 1111 - -
Rops5g00326 1150 CDD SANT 672 717 IPR001005 -
Rops5g00326 1150 MobiDBLite consensus disorder prediction 930 946 - -
Rops5g00326 1150 SUPERFAMILY Homeodomain-like 646 714 IPR009057 -
Rops5g00326 1150 ProSiteProfiles Myb-like domain profile. 820 870 IPR001005 -
Rops5g00326 1150 ProSiteProfiles Myb-like domain profile. 665 717 IPR001005 -
Rops5g00326 1150 SUPERFAMILY Homeodomain-like 799 872 IPR009057 -
Rops5g00326 1150 CDD SANT 828 869 IPR001005 -
Rops5g00326 1150 Gene3D - 667 718 - -
Rops5g00326 1150 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 820 873 IPR017930 -
Rops5g00326 1150 MobiDBLite consensus disorder prediction 1091 1111 - -
Rops5g00326 1150 Pfam Myb-like DNA-binding domain 673 734 - -
Rops5g00326 1150 Pfam Myb-like DNA-binding domain 777 836 - -
Rops5g00326 1150 Gene3D - 773 823 - -
Rops5g00326 1150 Gene3D - 824 872 - -
Rops5g00326 1150 MobiDBLite consensus disorder prediction 1 31 - -
Rops5g00326 1150 MobiDBLite consensus disorder prediction 51 72 - -
Rops5g00326 1150 MobiDBLite consensus disorder prediction 1045 1076 - -
Rops5g00326 1150 SMART sant 773 821 IPR001005 -
Rops5g00326 1150 SMART sant 669 719 IPR001005 -
Rops5g00326 1150 SMART sant 824 872 IPR001005 -
Rops5g00326 1150 SMART sant 570 666 IPR001005 -
Rops5g00326 1150 SMART sant 722 771 IPR001005 -
Rops5g00326 1150 ProSiteProfiles Myb-like domain profile. 773 819 IPR001005 -
Rops5g00326 1150 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 774 819 IPR017930 -
Rops5g00326 1150 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 665 717 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops5g00326 Rops-Chr5 5529724 5537988 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops5g00326 446 924 MYB-Related Transcription Factor Family AT3G18100 52.857 2.31e-174 527
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Rops5g00326 Myb_DNA-bind_6 3.7e-13 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops5g00326 K09422 - gmx:778073 820.846