Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops5g00323 ATGTCTCCACGTCCCGACGAGCACGAACAAGACATCCACAGTGCCACCGACGATGAGTATGAAAAAGACAATCATTCCATCACCCGTGATGACGATGAAGTACTAGAGAAAGACATGGCTGACCTCGCGCAATCTTGCATGATCACTGCTCCTTGCGAAGCTATCAATGACGTTCATATGGAGGACCCACTATTGGCTGCCGGAGACACTGACTCAGACTCCGATGATGAATGGAGTGATCACGAGTGTGTTAAGAGAGTGCAGAGTCTCTGCAAATCTTCTACTTGTCTTCCACCTACTGACTCTGATTCCAGTGATGAAGGGAGTGATATGGAACGTCTTAAGAGAGTGCAGAGTCTCTACAATCCTTCCACTTTGACAACTTCAACTATGATCACTGTCTCTGACAGTGATGACTCTGCAGATGATTTTGAGGATGCCCATGCCATTCTCAAACGATTTTCCAACTATAACGAAGGTAATCGTGAAGGGGGAACAGAAACATTGACCAAAGGGGACAAGGCTTCAAGCCTATGCTGCGAGGCTGGCACTGCTAACAACTCCCTCTCTTCCAAATCAGATGCTGCTGGTGAATCATGCCCTATTCCTCTAAATCCTGATACCACCAATTTGATGACTGGTGACATCAAGATGCAGAATGGTGATTTTGTTGATAGTTATGAACCTGGTGCTGGTGTTGTTGAATCATGTCCTGTTCCTCAAAATCCAGATACCACCAATTTGGTGACTGGTGATATCAAGATGCAGCATGATGTTTTTATTGATAGTTATGAATATGCTGGTGCTGAATCATGCCTTGTTCCTCAACATCCCAACACCACCAATTTGCTGATTTGTGACATCAAAATGCAGTATGATGAATTTTTTTATAGTTGTGAACCTGATGTTGGTGAATCATGCCTTGTTCCTCAAAATCCTTATACCACCAATTTGGTGACCGGTGACACCGACATGAAGCATGGTGATTTTTTTTATAGTTATGAACCTGATGTTGGTGTTGAATCATGCTCTGTTCCTCAAAATCCTTATACCACCAATTTGGTGACCGGTGAAGCCGAGATGCAGCTTGGTGATTTTGTTGATAGCTACGAACCTGATGCTGGTCCTGAATCATGCCTTGTTCCTCAACATCCCAACACCACCAATTTGGTGACTGGTGACATCAAAATGCAGCATGGTTATTTTGTTGATAGTTATGAATCTGATGCTGGTGCTGCTGAATCATGCCCTGTTCCTCAAAATCCTGATACCACCAATTTGGTGACTGGTGACATCATGATGCAGCATGATGATTTTGTTGATAGTTATGAACCTGATGCTGGTGCTGAATCATGCCTTGTTCCTCAAAATCCTGATACCACCAATTTGGTGACTGGTGACACCGAGATGCAGCTTGGTGATTTAATCGACAGTCATGAACCTGATGCTGGTGCCGCTGAATCATGCCCTGTTCCTCAAAATCCTGATACCACCAATTTGGTGACTGGTGACATCATGATGCAGCATGATGATTTTGTTGATAGTTATGAACCTGATGCTGGTGCTGAATCATGCCTTGTTCCTCAAAATCCTGATACCACCAATTTGGTGACTGGTGACACCGAGATGCAGCTTGGTGATTTAATCGACAGTCATGAACCTGATGCCGGTGAGTCATCCAGCTTACCACAAAAAAGATCAAGGCTTCCTCCGGCAGTTAGTTCTTTAGTTGATGCCATCAACCAGAATAGGGCTCTCCAGAAATTTCATAGAAGTAAGTTGATCGGGCTTGAAGCAAAAATTGAGGAAAACAAAAAGATAAAGAACAAAGTTAAAGTCCTTAAGGACTTCCAAATTACGTGCAGTAGAAGAACAGGGAGGGCTTTATCACTGAAAAAGGATCCTCGTGTTCAGTTGATATCTGCAAGAAAGAGTCCTGCTCCTGATAACACAAAGGGCAAGAATAAAAAGGAATCTCCAATGTGTTATGGCCCACCCGAGAATTCTCGAGTTGCTAATTATAAGATGGTATTGGAAAGATTTCCGGTTTCAATAGATCGGAAAAAATGGTCTGATGTGGAAAGGGAAAATCTTTCAAAGGGAATTAAGCAACAATTCCAAGAAATGTTGCTTCAAATTTCAGTGAATAGAGCAAGTTTGGAGTGCTCAAGTGGAGATGCAAATAACATGGATAACATAATTGCATCTGTTAAAGATATTGAAATCACACCAGAGAGGATTAGAGAATTTTTACCTAAAGTTAATTGGGATCGGTTGGCTTCCATGTATCTTCCTGGGCGTACTGGAGCTGAATGTCAATCAAGGTGGTTGAATTGTGAAGATCCTTTGATCAACCATGGCCCATGGACTAGTGAGGAGGACAAGTCTCTTATGATTGTTGTCCAAGAAAAGGGCATTAGGAACTGGTTTGATATTGCTGTGTCATTGGGTACAAATAGGACTCCGTTTCAATGTTTGGCTCGATACCAAAGGAGCTTAAACCCTTCAATGTTGAATAGTGAATGGACTGAGGAAGAAGATGCTCAACTTAGAGATGCTGTTGCACATTTTGGTGAGAACAATTGGCAGTCTGTGGCTTCTGTTTTAGAACGGCGGACAGGAGCCCAGTGCTCAAATAGGTGGAGAAAATCACTTTGTCCAGTGAGGAAAGGGAGCTTTACTCTTGAGGAGGATAAACGCCTAACAGTAGCAGTCATGCTTTTTGGACAGAAATGGAATCAAATAGCTAAATATGTTCCTGGCCGGAGCCAATCTCAGTGTAGGGACAGATACCTTAATAGCTTGGATCCTTCTTTGAAATGGGGTGGATGGACTGAGGAAGAGGATTCAAGATTAGCAGCTGCAATTATCAAGCATGGATTTTGCTGGACTAAGGTGGCTGAAGATTTGCCTCCCCGTACCGATTCTCAATGCCGAAAGAGATGGAAGGTGTTACATCCTGACCAATTTCTGGTTGTTCAGCAAGCAAGAAAGAAGCAAAAGTGTCATATTGCTAGTAACTTTGTTGATCGAGAATCTGAACGCCCTAACTTTACACCAAATGACTTTCTTCCTATAGAAATGTTAGCTTCATCATCTAATGCTGATGCTTCCAGTCTTCAAAGGAAGCAGAAGAAGTCAAGCAATGTTCCCAAGAAAAGAAGGTCCAACAAGCATGCGGAGAAGGCTCGAATTGCTCCCAAGGAAGTAAAGGATGTAGCATGTAATGACAAGGTCAAGATTAGTATTGAGAGTTCAGAAAGTCAAGATTGGGACATGACTCTTGCATCCTTTCTACACAAAAAATCCAAGAAGGGACACTCTAAAAGTATCAAAATTAATGATGCTTCTAAAGGACAAGGGGGAAAACCAGAAGATGGAGATGAAAAATCAGAGGATGAAAATAATTTGACCAGTGATGATGATGATGACATGACTATTGCATGTCGTATGCGAAATAAATTGAAGAAAAGTGGTCAAGCTGTCAAAGGAATTAGTGCAAGCTCTTCTTCCAAGCCAAGTGGATTATCCATGCCACAACCTGAACGGAAAAACAAACAAGTATACCAGTCCACAAAATTTGGATAG 3588 0.4231 MSPRPDEHEQDIHSATDDEYEKDNHSITRDDDEVLEKDMADLAQSCMITAPCEAINDVHMEDPLLAAGDTDSDSDDEWSDHECVKRVQSLCKSSTCLPPTDSDSSDEGSDMERLKRVQSLYNPSTLTTSTMITVSDSDDSADDFEDAHAILKRFSNYNEGNREGGTETLTKGDKASSLCCEAGTANNSLSSKSDAAGESCPIPLNPDTTNLMTGDIKMQNGDFVDSYEPGAGVVESCPVPQNPDTTNLVTGDIKMQHDVFIDSYEYAGAESCLVPQHPNTTNLLICDIKMQYDEFFYSCEPDVGESCLVPQNPYTTNLVTGDTDMKHGDFFYSYEPDVGVESCSVPQNPYTTNLVTGEAEMQLGDFVDSYEPDAGPESCLVPQHPNTTNLVTGDIKMQHGYFVDSYESDAGAAESCPVPQNPDTTNLVTGDIMMQHDDFVDSYEPDAGAESCLVPQNPDTTNLVTGDTEMQLGDLIDSHEPDAGAAESCPVPQNPDTTNLVTGDIMMQHDDFVDSYEPDAGAESCLVPQNPDTTNLVTGDTEMQLGDLIDSHEPDAGESSSLPQKRSRLPPAVSSLVDAINQNRALQKFHRSKLIGLEAKIEENKKIKNKVKVLKDFQITCSRRTGRALSLKKDPRVQLISARKSPAPDNTKGKNKKESPMCYGPPENSRVANYKMVLERFPVSIDRKKWSDVERENLSKGIKQQFQEMLLQISVNRASLECSSGDANNMDNIIASVKDIEITPERIREFLPKVNWDRLASMYLPGRTGAECQSRWLNCEDPLINHGPWTSEEDKSLMIVVQEKGIRNWFDIAVSLGTNRTPFQCLARYQRSLNPSMLNSEWTEEEDAQLRDAVAHFGENNWQSVASVLERRTGAQCSNRWRKSLCPVRKGSFTLEEDKRLTVAVMLFGQKWNQIAKYVPGRSQSQCRDRYLNSLDPSLKWGGWTEEEDSRLAAAIIKHGFCWTKVAEDLPPRTDSQCRKRWKVLHPDQFLVVQQARKKQKCHIASNFVDRESERPNFTPNDFLPIEMLASSSNADASSLQRKQKKSSNVPKKRRSNKHAEKARIAPKEVKDVACNDKVKISIESSESQDWDMTLASFLHKKSKKGHSKSIKINDASKGQGGKPEDGDEKSEDENNLTSDDDDDMTIACRMRNKLKKSGQAVKGISASSSSKPSGLSMPQPERKNKQVYQSTKFG* 1196
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops5g00323 1195 Gene3D - 840 888 - -
Rops5g00323 1195 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 834 889 IPR017930 -
Rops5g00323 1195 SUPERFAMILY Homeodomain-like 837 931 IPR009057 -
Rops5g00323 1195 CDD SANT 788 833 IPR001005 -
Rops5g00323 1195 PANTHER SNRNA-ACTIVATING PROTEIN COMPLEX SUBUNIT 4 29 1175 - -
Rops5g00323 1195 MobiDBLite consensus disorder prediction 1162 1195 - -
Rops5g00323 1195 CDD SANT 743 778 IPR001005 -
Rops5g00323 1195 CDD SANT 944 985 IPR001005 -
Rops5g00323 1195 MobiDBLite consensus disorder prediction 548 570 - -
Rops5g00323 1195 MobiDBLite consensus disorder prediction 1046 1061 - -
Rops5g00323 1195 Gene3D - 785 834 - -
Rops5g00323 1195 MobiDBLite consensus disorder prediction 1 33 - -
Rops5g00323 1195 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 890 935 IPR017930 -
Rops5g00323 1195 ProSiteProfiles Myb-like domain profile. 781 833 IPR001005 -
Rops5g00323 1195 Pfam Myb-like DNA-binding domain 789 850 - -
Rops5g00323 1195 Pfam Myb-like DNA-binding domain 893 952 - -
Rops5g00323 1195 Gene3D - 889 939 - -
Rops5g00323 1195 Gene3D - 683 784 - -
Rops5g00323 1195 Gene3D - 940 988 - -
Rops5g00323 1195 MobiDBLite consensus disorder prediction 1101 1195 - -
Rops5g00323 1195 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 936 989 IPR017930 -
Rops5g00323 1195 SMART sant 686 782 IPR001005 -
Rops5g00323 1195 SMART sant 838 887 IPR001005 -
Rops5g00323 1195 SMART sant 785 835 IPR001005 -
Rops5g00323 1195 SMART sant 889 937 IPR001005 -
Rops5g00323 1195 SMART sant 940 988 IPR001005 -
Rops5g00323 1195 MobiDBLite consensus disorder prediction 1034 1069 - -
Rops5g00323 1195 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 781 833 IPR017930 -
Rops5g00323 1195 CDD SANT 841 885 IPR001005 -
Rops5g00323 1195 ProSiteProfiles Myb-like domain profile. 834 885 IPR001005 -
Rops5g00323 1195 ProSiteProfiles Myb-like domain profile. 889 935 IPR001005 -
Rops5g00323 1195 SUPERFAMILY Homeodomain-like 915 988 IPR009057 -
Rops5g00323 1195 SUPERFAMILY Homeodomain-like 762 829 IPR009057 -
Rops5g00323 1195 CDD SANT 892 935 IPR001005 -
Rops5g00323 1195 ProSiteProfiles Myb-like domain profile. 936 986 IPR001005 -
Rops5g00323 1195 MobiDBLite consensus disorder prediction 642 666 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops5g00323 Rops-Chr5 5481007 5494209 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops5g00323 547 1040 MYB-Related Transcription Factor Family AT3G18100 52.871 1.51e-175 531
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Rops5g00323 Myb_DNA-bind_6 3.9e-13 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops5g00323 K09422 - gmx:778073 787.719