Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops5g00316 ATGGCAGAACTTGATCTATCCAAGAAAGTAGCTGATAGGTATCTTAAGCGTGAGGTCCTTGGTGAAGGTACATACGGTGTCGTTTACAAAGCCATTGATACACAGACAGGACAGACAGTGGCAATTAAGAAGATTCGACTTGGCAAACAGAAAGAAGGGGTGAATTTTACAGCTCTTAGAGAAATTAAACTTCTTAAAGAGCTAAAAGATCCAAACATTATTGAGTTGATTGATGCGTTCCCACATAAAGGGAATTTGCATCTTGTGTTTGAATTCATGGAGACTGACCTCGAAGCTGTTATAAGAGACCGAAATATTTTCCTTTCTCCGGGTGATATAAAATCTTACCTTCAAATGACACTAAAAGGTCTTGCTTTTTGCCACAAGAAATGGGTTTTGCATAGGGATATGAAGCCAAATAACTTGTTGATAGGATCTAATGGACAGCTGAAACTTGCAGATTTTGGTTTAGCACGGATATTTGGAAGCCCAGATCGCAGGTTCACTCATCAGGTGTTTGCTCGGTGGTATAGAGCACCTGAGTTGTTATTTGGCACCAAGCAGTATGGTTCTGGGGTAGATGTTTGGGCTGCAGCTTGTATATTTGCTGAACTTCTTCTTCGTCGACCCTTTCTTCAGGGTTCAAGTGATATTGATCAATTAGGAAAGATTTTCGCCGCATTTGGAACTCCATCACCTTCTCAGTGGCCTGATATGGTATACCTTCCTGATTATGTTGAATACCAATATGTTCCTGCCCCACCTTTGCGTTCTTTGTTTCCAATGGCAAGTGATGATGCTTTAGATTTGTTGTCAAAGATGTTTACTTATGATCCAAAAGCTAGAATTTCTGTGCAGCAAGCATTAGAACACAGGTACTTTTCTTCTGCGCCTCTGCCCACAGATCCAGATAAGCTTCCAAGACCTGCCCCTAAGAAGGAATCTAGGGTTTCAGATTTCAATCCAGATGAGGGTCCCACTGTTTTATCACCTCCAAGGAAGTCTAGGAGGGTGATGCCAGGGCGTGATGGGTTGGAAGGAAATTCTTTGCAAGGGGACAAGATTGATGACAATGTTGGTAATTTCAGACAGAGCGATAATACAGGCAAGAATGAGCCTGCGCCAATGTCACTAGATTTTTCCGTCTTTGGATTAAAACCTCCAAATAGACCAACAATTAACAGTGCTGACAGATCACATTTAAAAAGGAAATTAGATCTAGAATTCTAG 1230 0.413 MAELDLSKKVADRYLKREVLGEGTYGVVYKAIDTQTGQTVAIKKIRLGKQKEGVNFTALREIKLLKELKDPNIIELIDAFPHKGNLHLVFEFMETDLEAVIRDRNIFLSPGDIKSYLQMTLKGLAFCHKKWVLHRDMKPNNLLIGSNGQLKLADFGLARIFGSPDRRFTHQVFARWYRAPELLFGTKQYGSGVDVWAAACIFAELLLRRPFLQGSSDIDQLGKIFAAFGTPSPSQWPDMVYLPDYVEYQYVPAPPLRSLFPMASDDALDLLSKMFTYDPKARISVQQALEHRYFSSAPLPTDPDKLPRPAPKKESRVSDFNPDEGPTVLSPPRKSRRVMPGRDGLEGNSLQGDKIDDNVGNFRQSDNTGKNEPAPMSLDFSVFGLKPPNRPTINSADRSHLKRKLDLEF* 410
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops5g00316 409 SUPERFAMILY Protein kinase-like (PK-like) 9 301 IPR011009 -
Rops5g00316 409 Gene3D Phosphorylase Kinase; domain 1 4 94 - -
Rops5g00316 409 Gene3D Transferase(Phosphotransferase) domain 1 95 310 - -
Rops5g00316 409 PANTHER CELL DIVISION PROTEIN KINASE 12 300 - -
Rops5g00316 409 MobiDBLite consensus disorder prediction 306 320 - -
Rops5g00316 409 SMART serkin_6 14 294 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops5g00316 409 CDD STKc_CDK7 13 307 IPR037770 GO:0005675|GO:0008353|GO:0070985
Rops5g00316 409 Pfam Protein kinase domain 16 294 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops5g00316 409 ProSitePatterns Protein kinases ATP-binding region signature. 20 44 IPR017441 GO:0005524
Rops5g00316 409 FunFam Putative cyclin-dependent kinase 7 95 310 - -
Rops5g00316 409 MobiDBLite consensus disorder prediction 294 409 - -
Rops5g00316 409 ProSitePatterns Serine/Threonine protein kinases active-site signature. 132 144 IPR008271 GO:0004672|GO:0006468
Rops5g00316 409 ProSiteProfiles Protein kinase domain profile. 14 294 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops5g00316 409 FunFam Cyclin-dependent kinase D-1 5 94 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops5g00316 Rops-Chr5 5382239 5387574 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops5g00316 8 409 Core Cell Cycle Gene Families AT1G73690 76.617 0.0 624
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CDK-CDK7 Rops5g00316 Pkinase 1.4e-71 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops5g00316 K02202 - gmx:100814263 770.77