Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops5g00299 ATGGGGAGTGTTTCGTCTGAAGATGGTTCTGACCGTTGCGGTAATTACAGTCCGAGTGCTGACATCAGCGAATCGGAGAGTTGCAGCCGATTTTTGCGATCGCCGTTTCGGACGCCGAGGAGCCTCGGCTACGCCAATCTCTCGCTGTGTCCCCTCGCCGCTCATTTTAACTTCCCGTCGGCGCAGGTGATGTTGCCAGTCATTGGAGGCAAAGACGTCGTCGCTTGTGATCACAAGCGTGACTTGGATTTGTCCGGTATAGATCCTTCTCTTCCGTACAATTCCAAGTGTGAGGCAGTCTTCAAACTTTTCAAAGGGTTTGTAACTATAGAAGCACTAATTCCTGATGCAATGATCATCATCAGCGTGCTTGGTGCCTGTACAAAAAACGCAGATCAAGAAAAGGTGATGAGGGGCCACCGCGTAAGAGAGAAATGGTTTCACAAGGAATTAGTGAGTGGATTTCTCCGAAATGCTAAAGACATGCTTACTATCAATGGAGAAATTCATATTACCCACAAGACAGGGCATCCTTTTAGTACGTGGGATATCAAGAAATTGGCAAGTGATGAGACATTGGCCTTTGTTGAAGAAGTTAAGTTTTATCAATATTTTTACCTCGGTTATAATAACATGAGAGGATCTAACTTTAAATGTGACCAGAGCTTCCCAATTGGAAAGAGCAGCACTTTTAAATTCGCAATGGAACGTTCTTTGGCAAGGGGAAAAAACCCTAAAACCTTCACGCTATCAACGTCGCCAACCCCACCCAAAGTCCTCGAACTTCACGGTCACAACCCACTACCCAAACCCAAAGAAGAACATCATCAAGACCCACACGTGCATCTCTCCCCACCACAACGTCTTCCTCCGACCACCCTTCCACCTCGTACGCCAGCAGCAGCGGTTCCATCGGTTACAGACTCTCCTCCGACACCTCAATCTCAAGCCGAACATCTCTCGCTCCGTGACAGCCTTCCAGAAAACCCAAACATCTACGACTTCTCCGAAATCTGTTCCTCCACCAACAACTTCCTCTCCAACCGTTGCTTATTGTGTTATCTGTTCCAACGCAAGTTCCGATGCAAGCTCCAAACCTCACAGCTTCGGGAACTTCTCTCCGTTATCTGCCACAGCCACCACGTCAGCATCATAAAACTCCTCAGCGCTTCCATCTCCGGCGACCACATATACCTTGTTTATGAATTCGTTAACGGAGCTAACCTCTCCGATTGCCTCCGAAACGCGAAGAACATTCACTTCACGGTGCTTTCAACTTGGATTTCGAGAATGCAGGTTTGGCCTACTCTGTTTCATAATAAAGATCTCTATGAACCTCTGCACATGTTTATTTGCATTGGAAATTATGAGAATAATGTCATAAAAGATGCTAATTTAGAAAGAAATTTAGAGGTTGCTTCAACTGATGCTCCTGATGGTCATGAGCACCATAACCTTTATGCTAGTATTGGATTGGAATTTGACTCTCTTGATGATGTTAAAAATTTCTACAAAGCATTTGCTAAGGAAGACGGCTTTGGAATTCGCACCCGTTCAAAGCTTTCTACAAATCAGAATGAATTCTATTACAATATTGATACTCTATAG 1608 0.4509 MGSVSSEDGSDRCGNYSPSADISESESCSRFLRSPFRTPRSLGYANLSLCPLAAHFNFPSAQVMLPVIGGKDVVACDHKRDLDLSGIDPSLPYNSKCEAVFKLFKGFVTIEALIPDAMIIISVLGACTKNADQEKVMRGHRVREKWFHKELVSGFLRNAKDMLTINGEIHITHKTGHPFSTWDIKKLASDETLAFVEEVKFYQYFYLGYNNMRGSNFKCDQSFPIGKSSTFKFAMERSLARGKNPKTFTLSTSPTPPKVLELHGHNPLPKPKEEHHQDPHVHLSPPQRLPPTTLPPRTPAAAVPSVTDSPPTPQSQAEHLSLRDSLPENPNIYDFSEICSSTNNFLSNRCLLCYLFQRKFRCKLQTSQLRELLSVICHSHHVSIIKLLSASISGDHIYLVYEFVNGANLSDCLRNAKNIHFTVLSTWISRMQVWPTLFHNKDLYEPLHMFICIGNYENNVIKDANLERNLEVASTDAPDGHEHHNLYASIGLEFDSLDDVKNFYKAFAKEDGFGIRTRSKLSTNQNEFYYNIDTL* 536
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops5g00299 535 Pfam rRNA (uridine-N3-)-methyltransferase BTM5-like 147 213 IPR019446 GO:0070042|GO:0070475
Rops5g00299 535 MobiDBLite consensus disorder prediction 244 323 - -
Rops5g00299 535 MobiDBLite consensus disorder prediction 265 282 - -
Rops5g00299 535 MobiDBLite consensus disorder prediction 1 22 - -
Rops5g00299 535 MobiDBLite consensus disorder prediction 284 298 - -
Rops5g00299 535 Gene3D Transferase(Phosphotransferase) domain 1 330 433 - -
Rops5g00299 535 MobiDBLite consensus disorder prediction 305 322 - -
Rops5g00299 535 SUPERFAMILY Protein kinase-like (PK-like) 361 428 IPR011009 -
Rops5g00299 535 PANTHER OS09G0572100 PROTEIN 310 433 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops5g00299 Rops-Chr5 4776524 4793957 Dispersed/Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LysM Rops5g00299 DUF2431 1.1e-12 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops5g00299 - - gmx:100792694 179.104