Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops5g00290 ATGCCTGTTGTCACTGAACACATCAAATGGAGAAGACCCAGAAACCAGTCAAGGCATCCCATTTCAGAAACTGATTCAAGCCTGCAAATTTCTTCAATGATCCGATCCACTGGCTGCAAATCCACCATCTCCTCTCTTCTTTCTACTTTCTCCAACAACAGCAACAACAACACATTCAATGAAACCACTCATGTTAGTAGCCAGAACGAGAACAAAAAGAAGAAAAATAACAACAATAGCAACAGCAACTTCTCTGCATCAACCTTCAGAGGGTTTGGTTGCACTGCCGGTGCTTCACAACAGGTGTCAGTTCCGGCGATGATTCGTTCCTCTGCGGACTGGCAAGGGAAGAAGAAGAAGAACAGAAAAAAGAAGCATAGAAGGAATGGTAACAGTAGCAAGACATGTCATGGGGTTGTTGATGATGGTCACTGTCATGGTTCTGCAACCTGTGTGGATTTTCAGGATGTTTGGTGTGGCCCTGGAATAGGATTCTCAGCTGATGCAGCTGCATCTGTGGATTGTGTTGTGGCAAGGAAGAATGTGTCTTCAAGAGGAAAACTTGATGTGGAGAGGACAATACATAGGGAGCGTCCATCTTATTTTGGAAGGCGCACTGTAAATCCACAAAGTATCTCATTTTTGGATGATGATTCTGACATTTTTACTGCACGCCCTGGATTAGAGTCTTTTGGGAATGGTAGATTCTATAGCCACCTTCCACATCTGTCCCCTGATGGTCTTGCTGAGATGATGATAATTCAAGGAAGACTAATGGGGGGGCGATTTAATTCGCATGATCAATTTAGAGACTGGAGACTTGATATTGATAACTTGTCATATGAGCAATTGCTTGAGCTGGGTGAGAGAATTGGTCATGTGAACACTGGACTTAAAGAAGATGAGATGGGACTCAACATAAGGAAAATTAAGCTTTTGATTTCAAATGATACATCAAAGCATCAAATGGACAAAAAGTGCAGTATTTGTCAGGAGGAGTATGAATTTAATGATGAGCTGGGGAGGTTAAATTGTGAACACAGCTATCACTTTCAGTGTATAAAACAATGGCTTGTACTTAAAAACTTCTGCCCAGTTTGTAAGCAACAAGTTGTGGTGAAACACTGA 1128 0.4193 MPVVTEHIKWRRPRNQSRHPISETDSSLQISSMIRSTGCKSTISSLLSTFSNNSNNNTFNETTHVSSQNENKKKKNNNNSNSNFSASTFRGFGCTAGASQQVSVPAMIRSSADWQGKKKKNRKKKHRRNGNSSKTCHGVVDDGHCHGSATCVDFQDVWCGPGIGFSADAAASVDCVVARKNVSSRGKLDVERTIHRERPSYFGRRTVNPQSISFLDDDSDIFTARPGLESFGNGRFYSHLPHLSPDGLAEMMIIQGRLMGGRFNSHDQFRDWRLDIDNLSYEQLLELGERIGHVNTGLKEDEMGLNIRKIKLLISNDTSKHQMDKKCSICQEEYEFNDELGRLNCEHSYHFQCIKQWLVLKNFCPVCKQQVVVKH* 376
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops5g00290 375 MobiDBLite consensus disorder prediction 51 82 - -
Rops5g00290 375 Pfam Ring finger domain 326 368 IPR001841 -
Rops5g00290 375 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 295 373 IPR013083 -
Rops5g00290 375 MobiDBLite consensus disorder prediction 116 132 - -
Rops5g00290 375 ProSiteProfiles Zinc finger RING-type profile. 327 368 IPR001841 -
Rops5g00290 375 FunFam E3 ubiquitin-protein ligase rnf12-A 294 373 - -
Rops5g00290 375 SMART ring_2 327 367 IPR001841 -
Rops5g00290 375 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF165 25 371 IPR045191 GO:0061630
Rops5g00290 375 SUPERFAMILY RING/U-box 320 374 - -
Rops5g00290 375 MobiDBLite consensus disorder prediction 107 135 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops5g00290 Rops-Chr5 4484747 4489027 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops5g00290 4 282 C3H Transcription Factor Family AT1G73760 39.189 6.76e-48 162
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops5g00290 - - gmx:100818517 485.337
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops5g00290 5 4484747 4489027 Rops2g00107 2 1673949 1679833 ECH
Rops5g00290 5 4484747 4489027 Rops5g00290 5 4484747 4489027 ECH