Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops5g00278 ATGAGTTCTGAGGTGAAGGGTAGCCAGTTGGTGCCTGTGGATTCTGAGGAGCCAAGTAGAAGTGATCAAATGGTTTATGTGAGTTCCAAGGTTCCAAGTAGGTGGGGTGAATCATTGCCTGCGATCTCTGAGGTACCAAGTAGTCATGGTCAACCAATGTTGGGTGATTCTGAGGTTCTGAACAGCCAATCCCACACAAGTGAGATCTTCAAGTATTCTGAACTTGAGGAAGCCACCAACAATTTTGACCCGAGTAGAATACTTGGAAGTGGAGGCTATGGGACAGTATACTCTGGAACACTTAAAGATGGGCGTCCTGTTGCAATAAAGCGCTTGCATGAAGAAAGGTTCAAGATCTTTAGGTTACTTGATAAGAAGCTTGAGGGAGAGAGACTTAGAAAGTTCGTGAATGAAGTTGCAATGTTATCTTGCTTGAGGCATGAAAATCTTGTCCAACTGTATGGCTGCACCTCTCCTCAGACCCGTGAACTGCTACTTGTGCAAGAATACATTCCCAATGGAACTGTTGCTCATCAATGTCATCTTCTTGGTGGAAACTCCTTCCCATGGTCTACACGACTAAATGTTGCCATACAAACTGCAAGTGCATTGGCTTATCTTCATGCTTCCAATATCATCCATCGTGATGTGAAAACCAGTAATATTCTCCTTGACAGAAGTTTGAATGCCAAAGTTGCAGACTTCGGATTGTCACGCCTTGTCCCACATGGTGTTACTCATATTACCACTGATCCTGCTGGCACTCCAGGTTATATTGATCCAGAGTATTATGAACATTGCCATCTTTCTGATAAAAGTGATGTATATAGCTTTGGAGTAATATTGGTTGAGCTGATATCATCTTTGCCTGCATTTTGCGAGGATGATAAACAACCCTTTCTTTCAGACTTTGCCATGAATAAAATCCTTTGTGGAGAACTCCAAAAGCTTGTTGACCCAAATCTTGGATTTCAATCAGACAACTGGATAAGTGAAACAATTAGAGCAGTGGCAGAGTTAGCATTTAGGTGTCTACAACCCCAAAGAGACATGAGACCTTCCATGGGGGAGGTGTTAAATGATCTCGAGAGCATTAGAAGTGGACGTTCTCAAAATGCTCTTACCTGGGGTCCAAATATTTGTTCCAATGCTTCCAATGTTCACATTCTTTCCCGCTTGCCTGATGATTATTTTGATAAGAAATAG 1206 0.4237 MSSEVKGSQLVPVDSEEPSRSDQMVYVSSKVPSRWGESLPAISEVPSSHGQPMLGDSEVLNSQSHTSEIFKYSELEEATNNFDPSRILGSGGYGTVYSGTLKDGRPVAIKRLHEERFKIFRLLDKKLEGERLRKFVNEVAMLSCLRHENLVQLYGCTSPQTRELLLVQEYIPNGTVAHQCHLLGGNSFPWSTRLNVAIQTASALAYLHASNIIHRDVKTSNILLDRSLNAKVADFGLSRLVPHGVTHITTDPAGTPGYIDPEYYEHCHLSDKSDVYSFGVILVELISSLPAFCEDDKQPFLSDFAMNKILCGELQKLVDPNLGFQSDNWISETIRAVAELAFRCLQPQRDMRPSMGEVLNDLESIRSGRSQNALTWGPNICSNASNVHILSRLPDDYFDKK* 402
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops5g00278 401 SMART serkin_6 82 365 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops5g00278 401 Gene3D Phosphorylase Kinase; domain 1 55 170 - -
Rops5g00278 401 Pfam Protein kinase domain 85 360 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops5g00278 401 ProSiteProfiles Protein kinase domain profile. 82 365 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops5g00278 401 Gene3D Transferase(Phosphotransferase) domain 1 172 378 - -
Rops5g00278 401 ProSitePatterns Serine/Threonine protein kinases active-site signature. 212 224 IPR008271 GO:0004672|GO:0006468
Rops5g00278 401 MobiDBLite consensus disorder prediction 1 24 - -
Rops5g00278 401 ProSitePatterns Protein kinases ATP-binding region signature. 88 110 IPR017441 GO:0005524
Rops5g00278 401 PANTHER LEAF RUST 10 DISEASE-RESISTANCE LOCUS RECEPTOR-LIKE PROTEIN KINASE-LIKE 1.4 56 373 IPR044652 GO:0004672
Rops5g00278 401 SUPERFAMILY Protein kinase-like (PK-like) 61 363 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops5g00278 Rops-Chr5 4308350 4311278 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops5g00278 69 367 Receptor kinase-like Gene Family AT1G25390 54.545 3.48e-107 327
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_WAK_LRK10L-1 Rops5g00278 Pkinase 7.4e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops5g00278 - - tpra:123887372 591.652