Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops5g00277 ATGTTGCTTGTTGATGATGTTTTCATGCCAGTTATGAATGGTCTTCAAACAACAAAACTGATTCGGTCTTACGAGGAAACGGGTAGTTGGGAAGCAGCAAGAAAAGCTGGAATTGAACAAAGTTTATCAGCATCAGATGAATGTTCTGGACCACCCAAAAAGCGTATCCACATTATCGCGATGACAGCAAACACATTGTCAGAGAGTGCTGAAGAATGTTTTGCAAATGGTATGGACTCATTTGTGTCAAAACCTGTGACTTTCCAAAAATTGAAAGAGTGTCTGGAACAGCATCTAAGGTGA 303 0.4026 MLLVDDVFMPVMNGLQTTKLIRSYEETGSWEAARKAGIEQSLSASDECSGPPKKRIHIIAMTANTLSESAEECFANGMDSFVSKPVTFQKLKECLEQHLR* 101
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops5g00277 100 CDD REC_hyHK_CKI1_RcsC-like 6 95 - -
Rops5g00277 100 SUPERFAMILY CheY-like 3 100 IPR011006 -
Rops5g00277 100 Gene3D - 1 100 - -
Rops5g00277 100 ProSiteProfiles Response regulatory domain profile. 1 99 IPR001789 GO:0000160
Rops5g00277 100 PANTHER TWO-COMPONENT HISTIDINE KINASE 6 97 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops5g00277 Rops-Chr5 4302483 4303337 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops5g00277 2 99 Histidine Kinase Gene Family AT5G10720 62.245 1.49e-38 134
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Rops5g00277 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops5g00277 - - lja:Lj5g3v0473540.1 178.333