Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops5g00276 ATGAGGTTGAGGTGTGATCTGTTACAGTGCTGCTTCACTAGCACTTCTTCTGATACATTTCCAAAGGATGGTATTCAGTTGAAGTGGAAAATCTTCCCCTATTGTGAACTTGCCAAAGCCACAAACAATTTTGATCGATGCAATTGTTGTGGATGGGGAGACATGGCCACAATATATCATGGCAAACTTGACAATGGGTGTGAGATTGTAATTCAACGCTTTCATGAAGAAAAGCACCAAGCATTTCAAAAGTTCATCAATGAAACTGTGATCCTAAATTACTTACTCCATAAAAATCTTGTGTCAATTTATAGGCGCTCCTCTGATGAGGAACCCATGCTAGTACATGAATACCTCTCCAATGGCACTCTTGTTGGTCATCTTCAATGTGACAAGGAAGAAAGCATGGTACCTTAG 417 0.4005 MRLRCDLLQCCFTSTSSDTFPKDGIQLKWKIFPYCELAKATNNFDRCNCCGWGDMATIYHGKLDNGCEIVIQRFHEEKHQAFQKFINETVILNYLLHKNLVSIYRRSSDEEPMLVHEYLSNGTLVGHLQCDKEESMVP* 139
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops5g00276 138 Gene3D Phosphorylase Kinase; domain 1 16 118 - -
Rops5g00276 138 Pfam Protein tyrosine and serine/threonine kinase 51 133 IPR001245 GO:0004672|GO:0006468
Rops5g00276 138 SUPERFAMILY Protein kinase-like (PK-like) 29 131 IPR011009 -
Rops5g00276 138 ProSiteProfiles Protein kinase domain profile. 44 138 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops5g00276 138 PANTHER LEAF RUST 10 DISEASE-RESISTANCE LOCUS RECEPTOR-LIKE PROTEIN KINASE-LIKE 1.4 17 133 IPR044652 GO:0004672
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops5g00276 Rops-Chr5 4284745 4285265 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops5g00276 27 128 Receptor kinase-like Gene Family AT1G25390 42.453 2.27e-21 87.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_WAK_LRK10L-1 Rops5g00276 PK_Tyr_Ser-Thr 5.3e-08 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops5g00276 - - gsj:114418636 162.155