Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops5g00275 ATGGGTTGGGATCTCTTTCAGTGCTGCCTCACCAGCACTTCTTCTGACACGTTTCCTAATCACAGTAAGTTGAAGTGGCGAGTCTTACCCTATAGGCCACTTACAAAAGCCACAAATAATTTTGATCAGCATCATTGTCTTGAAAGGAGAGGCTTTGCCACAGTATATTATGGAAAACTTAAGGATGGACGTAAGATTGCAATACAGCTCTTTAACGAAGACAAGCGCCACATATTGCAACGGTTCATCAATGAAACTGATATCCTAAATTATATGCCCCACAAAAATCTTGTGATAATTTATGGCTGCGCCTCTCATCACAAGGAATCCATGCTAGTACATGAATACCTATCCAATGGAACTCTTGCTGCTCTTCTTCAAGGCGAAATAGCAGAAAGCAGCACATTACCTTGGCACACCCGATTGGATATCGCCATTGATACAGCAAATGCATTGGACTATCTTCACTATAATGGCATCATCCACCGTGATGTAAAGTCCAACAATATTCTCCTTGATAGTAACTTTTGTGCTAAAGTTTCTAACTTTCATTTATCACGGAAACTTCCACAAGGAGTTAATGCTACCCATGTTACAAGTGATATAATAGGAACATGTGGTTATATAGACCCAGAGTATGCGTCAAAAGGCTGGCTTGGCTTCCAAAATGATGTTTATAGTTTTGGTGTGGTGTTGTGTGAGCTTTTATCATCAATGATTGCAGAATATTGGGTTCGGAGTGAAGAGGATAGTCTTGCTACCCTTTTATGCACAAAAATTGAAAACCAAGCTTTGGTGGAGCTCTTGGATCCAAGACTTGGCTTCCAATCAGACCATAAGATCAAGCAGATGATGACTGCTACAGCTGAGCTCGCATTTCAGTGCTTGCAATGTCCACAAGAATTAAGGCCAAGCATGGAACAGGTGCTAGAGACTCTCAATGGCATAAAGGAAGGGAAATATGAAACTAGCTCCATGAAAGCTTTCAAAATCTTCCACCATGCTGAACTTGAAGAAGCTACTAACCATTTTGACACTTGCCTTGGAAAGGGAGGGTACGGCACGGTCTACTATGGAAAACTTCAAGACGGGCGAGAGGTTGCAATAAAACGTTTCCATGAGGAGACGGACAAAACCATTAAACAATTCATGAAGGAAATCGAGATCTTAAGTCTCTTGCACCATCAAAATCTGGTTTCACTTTATGGCTGCAGTTCTCGCCATAGCAACAAACATATGCTTGTGTACGAGTACATCCCCAATGGCACTATTTCTGACCATCTTCATGGATCTTCTTGTGGTAAACTACCATGGCTTACTAGATTGAATATTGCGATTGAAACTGCAATTGCCTTGGTATATCTTCACGACTCAGGGATCATCCACCGTGATGTAAAAGGGAGCAATATTCTGTTGGATGAAAATTTTACTGTTAAAGTTGCAGATTTTGGATTCTCACGGTTTCTTCCTCATTATGTTACTCATGTTTCAACTATTCCAGTAGGAACTCGTGCTTACATAGATCCAGACTATTATCTAACTGGAAAGGTCAGTGACAAAAGCGATGTCTATAGCTTTGGAGTGGTCTTGTTTGAGCTCATATCATCCAAAACCCCAAGATTGGAGGGCACGGAGCATGCTACTCTTGCCCAATTTGCAAAGAGTAAAATCTTAAACAACGCATTGGAGGAGCTAGTGGATCCAAGTCTTGGGTTTGATTCTGACCAAAATATAATGGAAATGATAACAGCAGCGGCAGAGTTAGCATTTCAGTGTGTACAGTGTCCCAAGGAACTCAGACCATCCATGAAACAGATACTAGAGACCTTGGAGGGCATAAGGAAGGGGAAATGGGGGTTCAACCAGATAACATAA 1875 0.4139 MGWDLFQCCLTSTSSDTFPNHSKLKWRVLPYRPLTKATNNFDQHHCLERRGFATVYYGKLKDGRKIAIQLFNEDKRHILQRFINETDILNYMPHKNLVIIYGCASHHKESMLVHEYLSNGTLAALLQGEIAESSTLPWHTRLDIAIDTANALDYLHYNGIIHRDVKSNNILLDSNFCAKVSNFHLSRKLPQGVNATHVTSDIIGTCGYIDPEYASKGWLGFQNDVYSFGVVLCELLSSMIAEYWVRSEEDSLATLLCTKIENQALVELLDPRLGFQSDHKIKQMMTATAELAFQCLQCPQELRPSMEQVLETLNGIKEGKYETSSMKAFKIFHHAELEEATNHFDTCLGKGGYGTVYYGKLQDGREVAIKRFHEETDKTIKQFMKEIEILSLLHHQNLVSLYGCSSRHSNKHMLVYEYIPNGTISDHLHGSSCGKLPWLTRLNIAIETAIALVYLHDSGIIHRDVKGSNILLDENFTVKVADFGFSRFLPHYVTHVSTIPVGTRAYIDPDYYLTGKVSDKSDVYSFGVVLFELISSKTPRLEGTEHATLAQFAKSKILNNALEELVDPSLGFDSDQNIMEMITAAAELAFQCVQCPKELRPSMKQILETLEGIRKGKWGFNQIT* 625
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops5g00275 624 ProSitePatterns Serine/Threonine protein kinases active-site signature. 460 472 IPR008271 GO:0004672|GO:0006468
Rops5g00275 624 ProSiteProfiles Protein kinase domain profile. 41 316 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops5g00275 624 PANTHER LEAF RUST 10 DISEASE-RESISTANCE LOCUS RECEPTOR-LIKE PROTEIN KINASE-LIKE 1.4 326 617 IPR044652 GO:0004672
Rops5g00275 624 Gene3D Phosphorylase Kinase; domain 1 333 418 - -
Rops5g00275 624 FunFam Wall-associated receptor kinase 3 117 332 - -
Rops5g00275 624 CDD STKc_IRAK 348 613 - -
Rops5g00275 624 ProSitePatterns Serine/Threonine protein kinases active-site signature. 160 172 IPR008271 GO:0004672|GO:0006468
Rops5g00275 624 ProSiteProfiles Protein kinase domain profile. 342 613 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops5g00275 624 Gene3D Transferase(Phosphotransferase) domain 1 419 619 - -
Rops5g00275 624 Gene3D Transferase(Phosphotransferase) domain 1 117 332 - -
Rops5g00275 624 SUPERFAMILY Protein kinase-like (PK-like) 17 313 IPR011009 -
Rops5g00275 624 Gene3D Phosphorylase Kinase; domain 1 12 116 - -
Rops5g00275 624 SUPERFAMILY Protein kinase-like (PK-like) 322 614 IPR011009 -
Rops5g00275 624 SMART serkin_6 41 311 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops5g00275 624 SMART serkin_6 342 608 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops5g00275 624 FunFam Wall-associated receptor kinase 3 419 623 - -
Rops5g00275 624 Pfam Protein tyrosine and serine/threonine kinase 51 313 IPR001245 GO:0004672|GO:0006468
Rops5g00275 624 Pfam Protein tyrosine and serine/threonine kinase 344 610 IPR001245 GO:0004672|GO:0006468
Rops5g00275 624 ProSitePatterns Protein kinases ATP-binding region signature. 348 370 IPR017441 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops5g00275 Rops-Chr5 4252861 4255183 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops5g00275 331 614 Receptor kinase-like Gene Family AT1G25390 56.507 7.21e-103 323
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_WAK_LRK10L-1 Rops5g00275 PK_Tyr_Ser-Thr 4.4e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops5g00275 - - gsj:114418636 965.296