Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops5g00274 ATGAGGTTAGGGTGTGATATGTTGCAATGCTGCTTCACTAGCACTTCTTCTGATACATTTCCAGAGGATGGTATTCAGTTGAAGTGGAAAATTTTCCCCTATAGAGAACTTGCCAAAGCCACAAACAATTTTGATCGATGCAATTGTTGTGGATGGGGAGACATGGCCACTGTATATTATGGCAAACATGGCAATGGGTGTGAGATTGCAATCCAACGCTTTCATGAAGAAAAGCGCCAAACATTTCAAAAGTTCATAAATGAAACTGTGATCCTAAATTACTTACCCCATAAAAATCTTGTGTCAATTTATGGGTGCGCCTCTGATGAAGAACCTGTATTAGTACATGAATACCTCTCCAATGGCACTCTTGCTGGTCATCTTCAATGTGATGAGGAAGAAAGCATGGTACCTTGGCATACCCGATTGGGTATTGCAATTGATACTGCAAGTGCATTGGACTATCTTCATGGTTATGGCATCATCCACTCTGATGTAACGTCCAGCAACATTCTCCTAGATAAGAACTTTTGTGCTAAACTCTCTAACTTTCTATTGTCACAGAAACTTCCAGAGGGAGTTTCTGTCAATGCTACACATGCTACAAGTGATATAATAGGAACATTTGGTTATCTAGATCCAGAGTATGAGCAATATGGCTGTCTAAGTGTGAAAAATGATGTTTATAGTTTTGGGGTGGTGTTATTTGAGCTTATATCATCAAAGCTTGTTAAATATTGGGAAGGGTGTGACGGTGATAGTCTTGTCACTATGATAAACAGAAAAATTCAAAACCAATCATTGGAGGAGCTAGTGGATCCAAGACTTGGCTTCCAGTCAGATTCTATCATCAAGCAGTTGATAATTGCTGTAGCAGAGCTTGCAACTCAGTGCTTGCTATGTCCGCAAGAGCTAAGGCCATACATGGAACATGTGCTAGAGACTCTCCATCGCATAAAACAAGATGCATGTGAAGAAAACCCAAAAAAAGGTTTCAAATTCTTCAATCTTGCTGAACTTGAAGAAGCCACTAAAGGTTTCAAGACTTGTCTTGGAAAGGGTGGGTTTGGCACTGTATATTATGGAAAACTTAGAGATGGGCGTAAGGTTGCAGTTAAACGTTTCCATAAAGAGACAGAACAGACCATTAAACAATTCATGAATGAAATTGACATCCTAAGTCTATTGCGCCATCAAAACCTCGTTTCACTCTATGGTTGCAGTCCCCGAGACAGCAATGAACACCTGCTAGTGTACGAGCATGTCTCATATGGCTCTCTTTCTAAGCATCTGCATGATGCCAAACTACCATGGTTCACTAGATTGAATGTTGCCATTGAGACTGCGGCAGCATTGGTATATCTTCATGATTCAGGTATCATCCACCGTGATGTAAAAGCAAGCAACATTCTCTTGGACAAGAATTTCATGGTTAAAGTTGCAGATTTTGGACTCTCACGGTCTTTTCCAGATTTTGTTACCCATGTTTCAACCATTCCGGTAGGTACTCGTGCTTACATAGATCCAGATTATTATCAATCTGGCAGGGTAAGTGACAAAAGTGATGTCTATGGCTTTGGGGTGGTATTGTTTGAGCTTATATCATCCAACCCCCCAAGTGTCATGGAGGGCACTGAGTGTGTCACTCTTGCTCACTTTGCAATGGATAAAATCTTGAACAAGACATTGGAAGAGCTAGTGGATCCAAGTCTTGGGTTTGATTCAGACAAAAACATAATGGAAATGATAACAGCAGTGGCAGAGTTAGCATTTCAGTGTGTACAGTGTCCCAAGGAACTAAGACCATCCATGAAACAGGTGCTAGAGACCCTGGAGGGCATAAAGAAGGGGATATGGTTATTCAACCAGCTAACATAG 1878 0.4089 MRLGCDMLQCCFTSTSSDTFPEDGIQLKWKIFPYRELAKATNNFDRCNCCGWGDMATVYYGKHGNGCEIAIQRFHEEKRQTFQKFINETVILNYLPHKNLVSIYGCASDEEPVLVHEYLSNGTLAGHLQCDEEESMVPWHTRLGIAIDTASALDYLHGYGIIHSDVTSSNILLDKNFCAKLSNFLLSQKLPEGVSVNATHATSDIIGTFGYLDPEYEQYGCLSVKNDVYSFGVVLFELISSKLVKYWEGCDGDSLVTMINRKIQNQSLEELVDPRLGFQSDSIIKQLIIAVAELATQCLLCPQELRPYMEHVLETLHRIKQDACEENPKKGFKFFNLAELEEATKGFKTCLGKGGFGTVYYGKLRDGRKVAVKRFHKETEQTIKQFMNEIDILSLLRHQNLVSLYGCSPRDSNEHLLVYEHVSYGSLSKHLHDAKLPWFTRLNVAIETAAALVYLHDSGIIHRDVKASNILLDKNFMVKVADFGLSRSFPDFVTHVSTIPVGTRAYIDPDYYQSGRVSDKSDVYGFGVVLFELISSNPPSVMEGTECVTLAHFAMDKILNKTLEELVDPSLGFDSDKNIMEMITAVAELAFQCVQCPKELRPSMKQVLETLEGIKKGIWLFNQLT* 626
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops5g00274 625 ProSitePatterns Serine/Threonine protein kinases active-site signature. 460 472 IPR008271 GO:0004672|GO:0006468
Rops5g00274 625 PANTHER LEAF RUST 10 DISEASE-RESISTANCE LOCUS RECEPTOR-LIKE PROTEIN KINASE-LIKE 1.4 331 617 IPR044652 GO:0004672
Rops5g00274 625 SUPERFAMILY Protein kinase-like (PK-like) 29 322 IPR011009 -
Rops5g00274 625 SMART serkin_6 44 320 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops5g00274 625 SMART serkin_6 345 620 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops5g00274 625 ProSitePatterns Tyrosine protein kinases specific active-site signature. 161 173 IPR008266 GO:0004672|GO:0006468
Rops5g00274 625 Gene3D Transferase(Phosphotransferase) domain 1 119 335 - -
Rops5g00274 625 Gene3D Transferase(Phosphotransferase) domain 1 422 618 - -
Rops5g00274 625 Gene3D Phosphorylase Kinase; domain 1 336 421 - -
Rops5g00274 625 FunFam Wall-associated receptor kinase 3 422 623 - -
Rops5g00274 625 Gene3D Phosphorylase Kinase; domain 1 18 118 - -
Rops5g00274 625 ProSitePatterns Protein kinases ATP-binding region signature. 351 373 IPR017441 GO:0005524
Rops5g00274 625 ProSiteProfiles Protein kinase domain profile. 44 320 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops5g00274 625 Pfam Protein tyrosine and serine/threonine kinase 348 611 IPR001245 GO:0004672|GO:0006468
Rops5g00274 625 Pfam Protein tyrosine and serine/threonine kinase 51 264 IPR001245 GO:0004672|GO:0006468
Rops5g00274 625 SUPERFAMILY Protein kinase-like (PK-like) 331 616 IPR011009 -
Rops5g00274 625 ProSiteProfiles Protein kinase domain profile. 345 620 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops5g00274 625 FunFam receptor-like protein kinase FERONIA 313 421 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops5g00274 Rops-Chr5 4235441 4242689 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops5g00274 334 615 Receptor kinase-like Gene Family AT1G25390 53.584 7.69e-96 305
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_WAK_LRK10L-1 Rops5g00274 PK_Tyr_Ser-Thr 4.2e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops5g00274 - - gsj:114418636 848.195