Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops5g00272 ATGCAACTTACAAAAGCCACAAATAATTTTGATCAACGTCAATGTCTTGAAAGGAGAGGCTTTGCCACAGTATATTATGGAAAACTTGAGAATGGATATGAGATAGTAATCCAACGCTTTAATGAAGACAAGCGCCAGATGCTGCAACAGTTCGTCAATGAAACTGATATCCTAAATTACATGCCCCACAAGAATCTTGTGTCAATTTATGGGTGCGCCTCTCATCACAAGGAGTACCTGCTAGTACATGAATACCTGTCCAATGGAACTCTTGCAGCACATCTTCAAGGCGAAATAGCAGAAACCAGAACATTACCTTGGCATACCCGATTGGATATTGCAATTGATACAGCTAATGCATTGGACTATCTTCACTATAATGGCATCATCCACCGTGATGTAAAGTCCAACAATATTCTCCTTGATAAGAGCTTTTGTGCTAAAGTTACTAACTTCCATTTATCATATAAATTTCCAGAAGGAGTAAATGCTACCCATGTTACAAGTGATATAATTGGAACATGTGGTTATATAGACCCGGAGTATGAGTCAAAAGGCTTGCTTAGCATCCAAAATGATGTTTATAGTTTCGGGGTCATATTGTGTGAGCTTATATCATCAGTGCTTGCAGAATATTGGGTTGAGAGTGATGTGGATAGCCTTGCTACTCTTTTGTGCACAAAGATTGAAAACCAAGCTTTGGTGGAGCTCTTGGATCCAAGACTTGGCTTTCAATCAGACCTTAAGATCAAGCAGATGATGACTGCTACAGCTGAGCTTGCATTCCGGTGCTTGCAATGTCCACAAGAATTAAGGCCAAGCATGGGACAGGTGCTAAAGACTCTCAATGGCATAAAGGAAGGGAAATATGAAACAAACTCAATGAAAGCTTTCAAAATCTTCCACCATGCTGAACTTGAAGAAGCTACTAATCATTTTGACACTTGCCTTGGAAAGGGAGGGTATGGCACAGTCTACTATGGAAAACTTGAAGATGGGCGAGAGGTTGCAATCAAGCATTTCCATGAGGAGACAGAGAAAACTAATTGGCAATTCCTGCAAGAAATTGAGATCTTAAGTCTCTTGCACCATCAAAATCTGGTTTCATTTTATGGCTGCAGTTCTCGTCATAGCAACAAGCACATGCTAGTGTACGAGTACATCCCCAATGGCACTATTTCTGACCATCTTCATGGATCTTCTTGTGGTAAACTACCATGGCTTACTAGATTGAATATTGCCATTGAAACTGCAACTGCCTTGGTATATCTTCATGAGTCAGGGATCATCCACCGTGACGTAAAAGGGAGCAATATTCTGTTGGATGAAAATTTTACTGTTAAAGTTGCAGATTTTGGACTCTCAAGGTTTCTTCCAGATTCTGTGACTCACATTTCAACTATTCCAGCAGGAACTCGTGCTTACATAGATCCGGACTATTATAAATTTGGTAGGGTTGGTGACAAAAGTGATGTCTATAGCTTTGGTGTGGTCTTGTTTGAACTCATATCATCCAACCCCTCAAGTTTAATGGAAGGCACAGAGCGTGTTACTCTTGCCCAATTTGCAATGAGTAAAATCTTAAACAATGCATTAGAGGAGCTAGTTGATCCAAGTCTTGGATTTGATTCTGACAAAAATGTAATGGAAATGATAACAGCAGTGGCAGAGTTAGCATTTCAGTGTGTACAGTGTCCCAAGGAACTCAGACCATCCATGAAACAAATACTAGAGACCTTGGAGGGCATAAGGAAGGGGACATGGGGATTCAACCAGATAACATAG 1785 0.4039 MQLTKATNNFDQRQCLERRGFATVYYGKLENGYEIVIQRFNEDKRQMLQQFVNETDILNYMPHKNLVSIYGCASHHKEYLLVHEYLSNGTLAAHLQGEIAETRTLPWHTRLDIAIDTANALDYLHYNGIIHRDVKSNNILLDKSFCAKVTNFHLSYKFPEGVNATHVTSDIIGTCGYIDPEYESKGLLSIQNDVYSFGVILCELISSVLAEYWVESDVDSLATLLCTKIENQALVELLDPRLGFQSDLKIKQMMTATAELAFRCLQCPQELRPSMGQVLKTLNGIKEGKYETNSMKAFKIFHHAELEEATNHFDTCLGKGGYGTVYYGKLEDGREVAIKHFHEETEKTNWQFLQEIEILSLLHHQNLVSFYGCSSRHSNKHMLVYEYIPNGTISDHLHGSSCGKLPWLTRLNIAIETATALVYLHESGIIHRDVKGSNILLDENFTVKVADFGLSRFLPDSVTHISTIPAGTRAYIDPDYYKFGRVGDKSDVYSFGVVLFELISSNPSSLMEGTERVTLAQFAMSKILNNALEELVDPSLGFDSDKNVMEMITAVAELAFQCVQCPKELRPSMKQILETLEGIRKGTWGFNQIT* 595
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops5g00272 594 Gene3D Phosphorylase Kinase; domain 1 286 387 - -
Rops5g00272 594 Gene3D Phosphorylase Kinase; domain 1 1 85 - -
Rops5g00272 594 ProSiteProfiles Protein kinase domain profile. 311 583 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops5g00272 594 SMART serkin_6 311 578 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops5g00272 594 SMART serkin_6 10 280 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops5g00272 594 ProSiteProfiles Protein kinase domain profile. 10 285 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops5g00272 594 SUPERFAMILY Protein kinase-like (PK-like) 292 584 IPR011009 -
Rops5g00272 594 Gene3D Transferase(Phosphotransferase) domain 1 88 285 - -
Rops5g00272 594 SUPERFAMILY Protein kinase-like (PK-like) 3 282 IPR011009 -
Rops5g00272 594 Pfam Protein tyrosine and serine/threonine kinase 313 580 IPR001245 GO:0004672|GO:0006468
Rops5g00272 594 Pfam Protein tyrosine and serine/threonine kinase 20 280 IPR001245 GO:0004672|GO:0006468
Rops5g00272 594 FunFam Wall-associated receptor kinase 3 388 594 - -
Rops5g00272 594 CDD STKc_IRAK 317 583 - -
Rops5g00272 594 ProSitePatterns Protein kinases ATP-binding region signature. 317 339 IPR017441 GO:0005524
Rops5g00272 594 Gene3D Transferase(Phosphotransferase) domain 1 388 588 - -
Rops5g00272 594 ProSitePatterns Serine/Threonine protein kinases active-site signature. 129 141 IPR008271 GO:0004672|GO:0006468
Rops5g00272 594 ProSitePatterns Serine/Threonine protein kinases active-site signature. 429 441 IPR008271 GO:0004672|GO:0006468
Rops5g00272 594 PANTHER LEAF RUST 10 DISEASE-RESISTANCE LOCUS RECEPTOR-LIKE PROTEIN KINASE-LIKE 1.4 297 587 IPR044652 GO:0004672
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops5g00272 Rops-Chr5 4204973 4208458 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops5g00272 300 584 Receptor kinase-like Gene Family AT1G25390 56.014 9.50e-105 327
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_WAK_LRK10L-1 Rops5g00272 PK_Tyr_Ser-Thr 2.6e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops5g00272 - - gmx:102666805 914.064