Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops5g00270 ATGCCTCTTCCTGTTCTTCCACCTTCATTTTCCTTCATCAACACCTTTTTCATCCTCTCACTCTTCTTCTTCCCAACATATTTATCTAGTGATGATGCTAAAGGGTACAAAGCTTGTGAACCTTTTAGATGTGGGAATTTCAGTGGCATAAGTTACCCTTTTTGGAGTAGCAACCAACCAGATTATTGTGGGCATCCAAAGTTCAAGCTTGATTGCCAGCAAGACAACTTGACTATTGACATCAAGTCCCAGAAGTTCCAAATCATTGATATAATTCCAAAATCTCAAAATTTGAAGCTTGCAAGGTTGGATTTATTGGATGACACATGTCCCAAACAGTATATCAATGTCAACTTGGATTTGGATTTCTTCAACTACACTTCCAATGATGATAGCTATACTCTATTATATGACTGTGGTCCTCCTCCATACACATATGGCAATTTAGAATCTTCTATACCTTTTTCTTGCCTCATAGATGGTGGTCCTCATGATGGATACTTAGTTCAAAGGGAAAATGTGGTGAATTTGATTCCTCTGGGGTGCAAGAATAACATCACAGTTCCTGTCCTAAAAGAGGTTTTCCAGAATGCCTTCATTAATAGCTCCCCTTTGGATTATGTTTTAGAGCAAGGATTTGATGTTGGATGGAGGGGTGTGGACAGGGCCGGCCCAACCCCAAGGCCACTCAAGCCCTTGCTTGAGGCCCCACATGCACTGTCACCATTAGCAGCACCAATATCTTTACCAACACCAACACATACACTATTACCACCTTATGGGCCAGAACACGAGGAACAGGCTAATCATTCTACTAGCAAATGGAATTGGAAAAGGAAACTCGTTGTTGGTGTTGTCTCTGCTGTGTTAGGAGCACTTGCAGTGATCACTGCCGTCTATTTCTATATGCGTCAAAAGAAGACTAATTATGCAATGTCATATGCTCAAACTCGGAGCCTCTCTTCTGATCCATCTTCAAAGGATGCTGAGATGGCAAGTCAGCACTTTGGATTGCCAGTCTTCACCTATACTGAGCTGGAAGAGGCCACAAACTACTTTGATCCATCCAAAGAACTAGGAGAAGGGGGCTTTGGGACAGTGTATTTCGGCAAACTTCGGGATGGGCGTTGTGTTGCAGTGAAAAGGTTGTATGAGAACAATTTCAGAAGAGTTGAGCAATTCATGAATGAAGTTAAGATCCTAGCAAGGTTAATCCACCCAAATCTTGTGTCACTATATGGATGCACTTCTCGCCACAGCCGTGAACTTCTGCTTGTATATGAGTATGTTCCTAATGGTACTGTTGCTGATCATCTTCATGGTAAACAAGCCAAACCTGGAACACTCCCCAATTGGCACATTAGAATGAATATTGCTGTGGAAACAGCAAGTGCATTGAAGTATCTTCATGTTCAAGACATCATCCACAGAGATGTGAAAACCAATAATATTCTTCTTGACAATCACTTTCGTGTCAAAGTAGCAGATTTTGGACTTTCACGTCTCTTTCCAAACCATGTTACACATGTTTCAACCGCTCCACAAGGGACTCCAGGTTATTTGGATCCAGAGTACCATGAGTGCTACCAGCTTACTAATAAAAGTGATGTCTATAGCTTTGGAGTGGTGTTGATTGAGTGA 1641 0.4174 MPLPVLPPSFSFINTFFILSLFFFPTYLSSDDAKGYKACEPFRCGNFSGISYPFWSSNQPDYCGHPKFKLDCQQDNLTIDIKSQKFQIIDIIPKSQNLKLARLDLLDDTCPKQYINVNLDLDFFNYTSNDDSYTLLYDCGPPPYTYGNLESSIPFSCLIDGGPHDGYLVQRENVVNLIPLGCKNNITVPVLKEVFQNAFINSSPLDYVLEQGFDVGWRGVDRAGPTPRPLKPLLEAPHALSPLAAPISLPTPTHTLLPPYGPEHEEQANHSTSKWNWKRKLVVGVVSAVLGALAVITAVYFYMRQKKTNYAMSYAQTRSLSSDPSSKDAEMASQHFGLPVFTYTELEEATNYFDPSKELGEGGFGTVYFGKLRDGRCVAVKRLYENNFRRVEQFMNEVKILARLIHPNLVSLYGCTSRHSRELLLVYEYVPNGTVADHLHGKQAKPGTLPNWHIRMNIAVETASALKYLHVQDIIHRDVKTNNILLDNHFRVKVADFGLSRLFPNHVTHVSTAPQGTPGYLDPEYHECYQLTNKSDVYSFGVVLIE* 547
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops5g00270 546 ProSitePatterns Serine/Threonine protein kinases active-site signature. 474 486 IPR008271 GO:0004672|GO:0006468
Rops5g00270 546 PANTHER LEAF RUST 10 DISEASE-RESISTANCE LOCUS RECEPTOR-LIKE PROTEIN KINASE-LIKE 1.4 18 546 IPR044652 GO:0004672
Rops5g00270 546 Gene3D Transferase(Phosphotransferase) domain 1 430 546 - -
Rops5g00270 546 SMART serkin_6 353 546 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops5g00270 546 Pfam Protein kinase domain 356 546 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops5g00270 546 Gene3D Phosphorylase Kinase; domain 1 323 429 - -
Rops5g00270 546 SUPERFAMILY Protein kinase-like (PK-like) 331 546 IPR011009 -
Rops5g00270 546 ProSiteProfiles Protein kinase domain profile. 353 546 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops5g00270 546 ProSitePatterns Protein kinases ATP-binding region signature. 359 381 IPR017441 GO:0005524
Rops5g00270 546 Pfam Wall-associated receptor kinase galacturonan-binding 39 101 IPR025287 GO:0030247
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops5g00270 Rops-Chr5 4187769 4196329 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops5g00270 268 546 Receptor kinase-like Gene Family AT1G25390 59.857 3.83e-108 335
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_WAK_LRK10L-1 Rops5g00270 Pkinase 1.2e-44 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops5g00270 - - gmx:100800873 672.93