Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Rops5g00270 | ATGCCTCTTCCTGTTCTTCCACCTTCATTTTCCTTCATCAACACCTTTTTCATCCTCTCACTCTTCTTCTTCCCAACATATTTATCTAGTGATGATGCTAAAGGGTACAAAGCTTGTGAACCTTTTAGATGTGGGAATTTCAGTGGCATAAGTTACCCTTTTTGGAGTAGCAACCAACCAGATTATTGTGGGCATCCAAAGTTCAAGCTTGATTGCCAGCAAGACAACTTGACTATTGACATCAAGTCCCAGAAGTTCCAAATCATTGATATAATTCCAAAATCTCAAAATTTGAAGCTTGCAAGGTTGGATTTATTGGATGACACATGTCCCAAACAGTATATCAATGTCAACTTGGATTTGGATTTCTTCAACTACACTTCCAATGATGATAGCTATACTCTATTATATGACTGTGGTCCTCCTCCATACACATATGGCAATTTAGAATCTTCTATACCTTTTTCTTGCCTCATAGATGGTGGTCCTCATGATGGATACTTAGTTCAAAGGGAAAATGTGGTGAATTTGATTCCTCTGGGGTGCAAGAATAACATCACAGTTCCTGTCCTAAAAGAGGTTTTCCAGAATGCCTTCATTAATAGCTCCCCTTTGGATTATGTTTTAGAGCAAGGATTTGATGTTGGATGGAGGGGTGTGGACAGGGCCGGCCCAACCCCAAGGCCACTCAAGCCCTTGCTTGAGGCCCCACATGCACTGTCACCATTAGCAGCACCAATATCTTTACCAACACCAACACATACACTATTACCACCTTATGGGCCAGAACACGAGGAACAGGCTAATCATTCTACTAGCAAATGGAATTGGAAAAGGAAACTCGTTGTTGGTGTTGTCTCTGCTGTGTTAGGAGCACTTGCAGTGATCACTGCCGTCTATTTCTATATGCGTCAAAAGAAGACTAATTATGCAATGTCATATGCTCAAACTCGGAGCCTCTCTTCTGATCCATCTTCAAAGGATGCTGAGATGGCAAGTCAGCACTTTGGATTGCCAGTCTTCACCTATACTGAGCTGGAAGAGGCCACAAACTACTTTGATCCATCCAAAGAACTAGGAGAAGGGGGCTTTGGGACAGTGTATTTCGGCAAACTTCGGGATGGGCGTTGTGTTGCAGTGAAAAGGTTGTATGAGAACAATTTCAGAAGAGTTGAGCAATTCATGAATGAAGTTAAGATCCTAGCAAGGTTAATCCACCCAAATCTTGTGTCACTATATGGATGCACTTCTCGCCACAGCCGTGAACTTCTGCTTGTATATGAGTATGTTCCTAATGGTACTGTTGCTGATCATCTTCATGGTAAACAAGCCAAACCTGGAACACTCCCCAATTGGCACATTAGAATGAATATTGCTGTGGAAACAGCAAGTGCATTGAAGTATCTTCATGTTCAAGACATCATCCACAGAGATGTGAAAACCAATAATATTCTTCTTGACAATCACTTTCGTGTCAAAGTAGCAGATTTTGGACTTTCACGTCTCTTTCCAAACCATGTTACACATGTTTCAACCGCTCCACAAGGGACTCCAGGTTATTTGGATCCAGAGTACCATGAGTGCTACCAGCTTACTAATAAAAGTGATGTCTATAGCTTTGGAGTGGTGTTGATTGAGTGA | 1641 | 0.4174 | MPLPVLPPSFSFINTFFILSLFFFPTYLSSDDAKGYKACEPFRCGNFSGISYPFWSSNQPDYCGHPKFKLDCQQDNLTIDIKSQKFQIIDIIPKSQNLKLARLDLLDDTCPKQYINVNLDLDFFNYTSNDDSYTLLYDCGPPPYTYGNLESSIPFSCLIDGGPHDGYLVQRENVVNLIPLGCKNNITVPVLKEVFQNAFINSSPLDYVLEQGFDVGWRGVDRAGPTPRPLKPLLEAPHALSPLAAPISLPTPTHTLLPPYGPEHEEQANHSTSKWNWKRKLVVGVVSAVLGALAVITAVYFYMRQKKTNYAMSYAQTRSLSSDPSSKDAEMASQHFGLPVFTYTELEEATNYFDPSKELGEGGFGTVYFGKLRDGRCVAVKRLYENNFRRVEQFMNEVKILARLIHPNLVSLYGCTSRHSRELLLVYEYVPNGTVADHLHGKQAKPGTLPNWHIRMNIAVETASALKYLHVQDIIHRDVKTNNILLDNHFRVKVADFGLSRLFPNHVTHVSTAPQGTPGYLDPEYHECYQLTNKSDVYSFGVVLIE* | 547 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Rops5g00270 | 546 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 474 | 486 | IPR008271 | GO:0004672|GO:0006468 | |
Rops5g00270 | 546 | PANTHER | LEAF RUST 10 DISEASE-RESISTANCE LOCUS RECEPTOR-LIKE PROTEIN KINASE-LIKE 1.4 | 18 | 546 | IPR044652 | GO:0004672 | |
Rops5g00270 | 546 | Gene3D | Transferase(Phosphotransferase) domain 1 | 430 | 546 | - | - | |
Rops5g00270 | 546 | SMART | serkin_6 | 353 | 546 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Rops5g00270 | 546 | Pfam | Protein kinase domain | 356 | 546 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Rops5g00270 | 546 | Gene3D | Phosphorylase Kinase; domain 1 | 323 | 429 | - | - | |
Rops5g00270 | 546 | SUPERFAMILY | Protein kinase-like (PK-like) | 331 | 546 | IPR011009 | - | |
Rops5g00270 | 546 | ProSiteProfiles | Protein kinase domain profile. | 353 | 546 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Rops5g00270 | 546 | ProSitePatterns | Protein kinases ATP-binding region signature. | 359 | 381 | IPR017441 | GO:0005524 | |
Rops5g00270 | 546 | Pfam | Wall-associated receptor kinase galacturonan-binding | 39 | 101 | IPR025287 | GO:0030247 |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Rops5g00270 | Rops-Chr5 | 4187769 | 4196329 | Dispersed/Proximal |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Rops5g00270 | 268 | 546 | Receptor kinase-like Gene Family | AT1G25390 | 59.857 | 3.83e-108 | 335 |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
PK | RLK-Pelle_WAK_LRK10L-1 | Rops5g00270 | Pkinase | 1.2e-44 | CL0016 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Rops5g00270 | - | - | gmx:100800873 | 672.93 |