Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops5g00268 ATGATCCTTCAAATCTCCTTCCATTACAATAAACCTCAACTATACATCACTGCCATTATCTTCTTCTTGGTTACCACTGTTCTATCTGTTAATCCAAAATTTGAGGCTTGCACACCTAGAAGCTGTGGCAATGGCCCACCCATAAAGTATCCTTTCTGGATTCCTGATGAACAGGAACCATTTTGTGGCTATCCTCACTTTGAGATCACCTGCAGGGACAACTATACAGTTCTCAGAACTTCTAATTATGATCTTTTAGTAAAAGATATCTCCTACTCTAACTCTTCATTTATTGCAGCCAACATAGATGTCTATGAGGACAAGTGTCCTGCTCCTATGTATAATTACAGCCGTGATCAAACTCCATTTACCTTTAGTTCTGAAAATTCCAATCTCTCTTTCTTCTACAACTGTACCACAGAACCCATAGATTACCCCTCTTATGAAGTAGACTGTGCTAAAAATGCTACACATTATTCTTTTGCGGTTTTTCATAAGGAGGCATTGGAGCACAAAAACTACTCCTTGAATGAGTGTCAGTTTATGGTTAATGCGCCATTGAACATGAATGCTGCTGTTAATTTCACTAGCTTGTTACGAATGAATTACACTGAAGTTTTGAAGATGGGGTTTCTTTTGAATTGGACTGCACCTGATTGCCATCACTGTGAGAAAAGTGGTGGACGCTGTGGATTTGATGATTATAAGTTCCTCTGCTTCTGCAAGGATAAGTCCTACCTAAAAAGTTGTGGTGATGACAAATGGAATTGGAGAAGGAAACTCGTTATTGGTTTTGTCTCTGCTGTGTTAGGAGCACTTGCAGTGATCGCTGCCGTCTATTTCTATATAAGCCGAAAGAAGAATAATTATGCAATGTCATATGCACAAACTCGGAGCCTCTCTTCTGATCCATCTTCAAAAGATGCTGAGATGGCAAGTCAACACTTTGGATTGCCAGTCTTCACCTATACTGAGCTGGAAGAGGCCACAAACTACTTTGATCCATCCAAAGAACTAGGAGAAGGGGGCTTTGGGACAGTGTATTTCGGAAAACTGCGGGATGGGCGTTGTGTTGCAGTGAAAAGGTTGTTTGAGAACAATTTCAGAAGAGTTGAGCAATTCATGAATGAAGTTAAGATCCTAGCAAGGTTAATCCACCCAAATCTTGTGTCACTATATGGATGCACTTCTCGCCACAGCCGTGAACTTCTGCTTGTATATGAGTATGTTCCTAATGGTACTGTTGCTGATCATCTTCATGGTAAACAAGCCAAACCTGGAACACTCCCTTGGCACATTAGAATGAATATTGCTGTGGAGACAGCAAGTGCATTGAAGTATCTTCATGTTGAAGACATCATCCATAGAGATGTGAAAACCAATAATATTCTTCTTGACAATCACTTTCGTGTCAAAGTAGCAGATTTTGGACTTTCACGTCTCTTTCCAAACCATGTTACACATGTTTCAACAGCTCCACAAGGGACTCCAGGTTATTTGGATCCAGAGTACCATGAGTGCTACCAGCTTACTAATAAAAGTGATGTCTATAGCTTTGGAGTGGTGCTGATTGAGCTGATATCATCCTTGCCTGCTGTTGATATAACAAGGCATAGGCATGAAATCAATTTGGCCAACATGGCCATTAACAAGATTCAAAATCAAGCACTGCATGAGCTTGTGGACCCAACACTTGGGTTTGAATCAGATTACAAAGTAAGGAAAATGATAAATGCTGTGGCTGAGTTAGCATTTCAATGCTTGCAGAGTTCCAAAGATATGAGACCTTCTATGGATGAAGTGCTTGATACTCTCAAGGACATACAGAATGATGGCAAATATAAAAGCCAACCAGAGGTAATGGATATTTCAAGCTCTGCTGATGATGTTGTGTTGCTGAAGGATGATCCACCTCCACCATCACCTGATTCAAATGTGGTGAGCAAGTCTACAACACCAAATGCTAGTGGATAA 1974 0.4048 MILQISFHYNKPQLYITAIIFFLVTTVLSVNPKFEACTPRSCGNGPPIKYPFWIPDEQEPFCGYPHFEITCRDNYTVLRTSNYDLLVKDISYSNSSFIAANIDVYEDKCPAPMYNYSRDQTPFTFSSENSNLSFFYNCTTEPIDYPSYEVDCAKNATHYSFAVFHKEALEHKNYSLNECQFMVNAPLNMNAAVNFTSLLRMNYTEVLKMGFLLNWTAPDCHHCEKSGGRCGFDDYKFLCFCKDKSYLKSCGDDKWNWRRKLVIGFVSAVLGALAVIAAVYFYISRKKNNYAMSYAQTRSLSSDPSSKDAEMASQHFGLPVFTYTELEEATNYFDPSKELGEGGFGTVYFGKLRDGRCVAVKRLFENNFRRVEQFMNEVKILARLIHPNLVSLYGCTSRHSRELLLVYEYVPNGTVADHLHGKQAKPGTLPWHIRMNIAVETASALKYLHVEDIIHRDVKTNNILLDNHFRVKVADFGLSRLFPNHVTHVSTAPQGTPGYLDPEYHECYQLTNKSDVYSFGVVLIELISSLPAVDITRHRHEINLANMAINKIQNQALHELVDPTLGFESDYKVRKMINAVAELAFQCLQSSKDMRPSMDEVLDTLKDIQNDGKYKSQPEVMDISSSADDVVLLKDDPPPPSPDSNVVSKSTTPNASG* 658
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops5g00268 657 SMART serkin_6 333 606 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops5g00268 657 SUPERFAMILY Protein kinase-like (PK-like) 315 632 IPR011009 -
Rops5g00268 657 ProSitePatterns Protein kinases ATP-binding region signature. 339 361 IPR017441 GO:0005524
Rops5g00268 657 Gene3D Transferase(Phosphotransferase) domain 1 410 621 - -
Rops5g00268 657 Pfam Wall-associated receptor kinase galacturonan-binding 37 98 IPR025287 GO:0030247
Rops5g00268 657 MobiDBLite consensus disorder prediction 612 657 - -
Rops5g00268 657 ProSitePatterns Serine/Threonine protein kinases active-site signature. 453 465 IPR008271 GO:0004672|GO:0006468
Rops5g00268 657 Pfam Protein kinase domain 336 603 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops5g00268 657 Gene3D Phosphorylase Kinase; domain 1 303 409 - -
Rops5g00268 657 FunFam Wall-associated receptor kinase-like 20 410 618 - -
Rops5g00268 657 ProSiteProfiles Protein kinase domain profile. 333 620 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops5g00268 657 Pfam Wall-associated receptor kinase C-terminal 158 244 IPR032872 -
Rops5g00268 657 PANTHER LEAF RUST 10 DISEASE-RESISTANCE LOCUS RECEPTOR-LIKE PROTEIN KINASE-LIKE 1.4 19 653 IPR044652 GO:0004672
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops5g00268 Rops-Chr5 4168269 4171402 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops5g00268 219 657 Receptor kinase-like Gene Family AT1G25390 54.000 2.68e-153 455
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_WAK_LRK10L-1 Rops5g00268 Pkinase 3.8e-49 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops5g00268 - - qsu:112024175 803.897