Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops5g00251 ATGGCGACGCCGTTAACGGGGCTGCAACAACAGCACTTAGACGGAGGAGTGGCGGTGCTATCGAATCGCGTGAGCAAGGTTGATTCTTCTTCCTCCAATGGCGGTGGTGGAAGCTTCAATCGTTCCTTGTTAGAATCGCCAATTTTGATTTTCTTGTTCTTCCAAAAAGCGATTAGGAACGAACTCGATGCGTTGCACCGATTGGCTATGGCGTTCGCCACCGGAAACCGCTCCGATATACGGCCACTCTCCGAACGATACCATTTCCTCAGATCGATGTATAGGCACCACTCCAATGCCGAAGATGAGGTGATTTTTCCAGCTCTAGATAAACGTGTGAAGAATGTAGCACAGACATATTCTCTTGAACATCAGGGTGAAAGTGATCTTTTTGATCATCTATTTGAGCTGCTAAACTCTTCCACCCATAATGATGAAAGTTTCCCAAAGGAGTTGGCATCCTGCACAGGAGCTCTGCAGACATCAGTTTGTCAACACATGGCTAAGGAGGAGCAGCAGGTATTTCCGCTGCTTATTGAGAAGTTCTCTCTAGAGGAACAGGCATCTTTAGTTTGGCAATTTCTTTGCAGTATTCCGGTGAATATGATGGCAGAATTTCTTCCCTGGCTTTCAACATCCATATCACCTGATGAATCTCAGGATTTGCGGAAGTGCTTAAGCAAGATTGTGCCGAAGGAAAAGCTTCTTCAAAAGGTTATTTTCACCTGGATGGAAGGGAGAAGTAGTGCCAACACAGTTGAAAGTTGTGTAGATAATTGTCAGGTTCAATGTAGTCCTAGTCCTTTAACCCATCAGAATGGAAAAATAAAATGTGCATGCAAGTCCACAGCAACTGGTAAAAGGAAATATTCTGGATCTATCCTAGATGTTTCTGATACCATGGGAACACATCCTATAGATGAAATACTGCTCTGGCATAATGCTATAAAAAAAGAGTTAAATGAGATAGCAGTGGAGACCAGAAAAATACAACAATCTGGAGATTTTACTGATCTGTCAGCTTTTAAAGAAAGGTTGCAATTTATTGCTGAAGTTTTCATATATCACAGTAATGCTGAGGACAAGGTTATTTTTCCAGCAGTAGATGGAGAGTTTTCTTTCTTTCAGGAGCATGCTGAAGAAGAAAGCCAATTTAATGAATTTCGGTCTTTGATTGAAAGTATTCAAAGTGAAGGAGCAACATCTAGTTCGGAAGCTGAATTTTTTTCCAAGTTGTGCTCGCATGCTGATCATATAATGATAACCATACAAAAACATTTCCATAATGAAGAAATTCAGGTTCTTCCACTTGCACGGAAGCACTTTAGCTTCAAAAGGCAACGTGAACTTGTGTATCAGAGCTTGTGCACGATGCCTTTGAGATTGATTGAGAGCGTCCTGCCATGGTTGATTGGAACATTAACTGAAGATGAAGCGGAGATGCTTCTGAAAAACATGCAATTGGCAGCTCCAGCAACAGATTCTGCTTTAGTTACACTCTTCAGTGGTTGGGCTTGCAAGGCTCATAAAGATGGTCTGTGTTTGTCTTCAAGTGCATCAGGTTGCTGTCCTGCTAAAAATATTGTTCAGTCTTCCTGCACTTCTACTTCTGCATTGTCTGGTAGAGATTGCTCAGTATTAACTGAATCAAATGGGACCCAAAGATCAGTCAAGCAAAATGTATTGGAGTTGCACAAAAATGAAGAAGTCCCTAAAACTCCAGAAAATGAAAGTATCGAGAAACAATGTTGTAGTGCCCGTTCATGTTGTGTGCCAGCTTTAGGAGTCAGCAGTAACAATTTGGGGCTGAGTTCACTTTCTACAGCCAAGTCTTTACGCTCCTTGTCGTTCACCTCTTCTGCCCCATCTCTTAATTCTAGTCTTTTCATATGGGAAACAGACAGCAGCTCATGTGATGTTGGCTCTGCAGAAAGACCAATTGACACCGTATTTAAATTCCATAAAGCTATAAGCAAAGACTTGGAGTATTTAGACGTTGAATCTGGAAAGCTTTGTGATGGTGATGAAACAACTATTCGACAATTTAGTGGAAGATTTCGTCTTTTGTGGGGTTTATATAGAGCTCATAGCAATGCTGAAGATGATATTGTATTTCCAGCATTGGAATCCAAAGAGGCGCTTCATAATGTGAGCCATTCTTACACGCTGGACCATAAGCATGAAGAAAAATTATTTGAAGATATTTCTTGTGTTCTTTCCGAGCTTTCTGTCCTCCATGAAGCCTTGCAGAGTACCCATATGTCAGAGGATTTGAGTGAAAGTAATTTTGGAATTTCTGATGCCAATGATAGTGATAATGTCAGAAAGTATAAAGAGCTTGCAACTAAGCTTCAAGGGATGTGCAAATCTATAAGAGTGACCCTGGATCAGCATATTTTCAGGGAAGAACTCGAGCTCTGGCCATTGTTTGGGAAACATTTCACTGTGGAAGAACAAGACAAGATAGTGGGCCGGATAATTGGAACTACAGGTGCTGAAGTTCTCCAATCCATGTTACCATGGGTAACTTCTGCACTTACACAAGATGAACAGAGCAAAATGATGGACACATGGAAACAGGCAACTAAGAACACTATGTTCAATGAATGGCTAAATGAATGCTTGAAAGAGAGTCCAGAGTCCACATCACAGACAGAAACGTCAGAGCATCGTACTTCTCAAAGAGGTGCTGACTATCAAGAAAGCTTGAACCTGAACGATCAGATGTTCAAGCCAGGTTGGAAAGACATATTTCGGATGAATCAAAATGAACTTGAGTCAGAAATCCGGAAGGTTTATCGTGACTCAACTCTTGATCCAAGGCGGAAGGACTATCTTGTGCAGAATCTGATAACAAGTCGCTGGATAGCTGCCCAACAGAAGTTACCTAAAGCCCTATCGGGGGAATCATCTAATAAACAAATAGAAGGACTCTCACCTTTGTTTCGGGACCCAGAGAAACAAGTATTTGGTTGTGAGCACTATAAGAGAAATTGCAAGCTTCGAGCTGCTTGCTGTGGCAAGTTATTTACATGCAGGTTTTGCCATGATAACACGAGTGATCACTCAATGGACAGAAAAGCAACATTGGAAATGATGTGTATGCGATGCCTGACTATACAGCCTGTTGGGCCTGTATGCGTGTCACCTTCATGTAATAGACTTTCAATGGCAAAGTACTATTGCAACATTTGCAAATTTTTTGATGATGAAAGGAATGTTTATCATTGCCCATTTTGCAATATATGCCGTGTTGGACAAGGGCTTGGGATTGATTACTTTCATTGTATGACATGCAATTGTTGCCTGGGGATGAAATCAGCATCTCACAAATGCCTGGAGAAGGGTTTAGAAATGAACTGCCCAATTTGCTGTGATGACTTGTTCACATCAAGTGCAACGGTCAGAGCTCTACCTTGTGGGCATTACATGCATTCATCTTGCTTTCAGGCATACACTTGTAGTCACTACACATGTCCAATCTGCAGCAAGTCATTGGGAGATATGGCGGTCTACTTTGGTATGCTTGATGCTTTGTTGGCTGCTGAGGAGCTTCCTGAAGAGTACAGGGACCGCTATCAGGACATACTCTGCAATGACTGTGATCGAAAGGGCACTTCACGGTTCCACTGGTTATATCACAAATGTGGATTTTGTGGCTCATATAATACCCGGGTTATCAAGAGTGAAGCAACAAATTCTAGTTGCCCTTAG 3714 0.4181 MATPLTGLQQQHLDGGVAVLSNRVSKVDSSSSNGGGGSFNRSLLESPILIFLFFQKAIRNELDALHRLAMAFATGNRSDIRPLSERYHFLRSMYRHHSNAEDEVIFPALDKRVKNVAQTYSLEHQGESDLFDHLFELLNSSTHNDESFPKELASCTGALQTSVCQHMAKEEQQVFPLLIEKFSLEEQASLVWQFLCSIPVNMMAEFLPWLSTSISPDESQDLRKCLSKIVPKEKLLQKVIFTWMEGRSSANTVESCVDNCQVQCSPSPLTHQNGKIKCACKSTATGKRKYSGSILDVSDTMGTHPIDEILLWHNAIKKELNEIAVETRKIQQSGDFTDLSAFKERLQFIAEVFIYHSNAEDKVIFPAVDGEFSFFQEHAEEESQFNEFRSLIESIQSEGATSSSEAEFFSKLCSHADHIMITIQKHFHNEEIQVLPLARKHFSFKRQRELVYQSLCTMPLRLIESVLPWLIGTLTEDEAEMLLKNMQLAAPATDSALVTLFSGWACKAHKDGLCLSSSASGCCPAKNIVQSSCTSTSALSGRDCSVLTESNGTQRSVKQNVLELHKNEEVPKTPENESIEKQCCSARSCCVPALGVSSNNLGLSSLSTAKSLRSLSFTSSAPSLNSSLFIWETDSSSCDVGSAERPIDTVFKFHKAISKDLEYLDVESGKLCDGDETTIRQFSGRFRLLWGLYRAHSNAEDDIVFPALESKEALHNVSHSYTLDHKHEEKLFEDISCVLSELSVLHEALQSTHMSEDLSESNFGISDANDSDNVRKYKELATKLQGMCKSIRVTLDQHIFREELELWPLFGKHFTVEEQDKIVGRIIGTTGAEVLQSMLPWVTSALTQDEQSKMMDTWKQATKNTMFNEWLNECLKESPESTSQTETSEHRTSQRGADYQESLNLNDQMFKPGWKDIFRMNQNELESEIRKVYRDSTLDPRRKDYLVQNLITSRWIAAQQKLPKALSGESSNKQIEGLSPLFRDPEKQVFGCEHYKRNCKLRAACCGKLFTCRFCHDNTSDHSMDRKATLEMMCMRCLTIQPVGPVCVSPSCNRLSMAKYYCNICKFFDDERNVYHCPFCNICRVGQGLGIDYFHCMTCNCCLGMKSASHKCLEKGLEMNCPICCDDLFTSSATVRALPCGHYMHSSCFQAYTCSHYTCPICSKSLGDMAVYFGMLDALLAAEELPEEYRDRYQDILCNDCDRKGTSRFHWLYHKCGFCGSYNTRVIKSEATNSSCP* 1238
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops5g00251 1237 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1116 1165 IPR013083 -
Rops5g00251 1237 CDD Hr-like 653 808 - -
Rops5g00251 1237 CDD RING-H2_Pirh2-like 1120 1163 - -
Rops5g00251 1237 Gene3D nmb1532 protein domain like 642 885 - -
Rops5g00251 1237 ProSiteProfiles Zinc finger CHY-type profile. 985 1054 IPR008913 GO:0008270
Rops5g00251 1237 FunFam Zinc finger protein-related isoform 1 1116 1165 - -
Rops5g00251 1237 ProSiteProfiles Zinc finger RING-type profile. 1121 1163 IPR001841 -
Rops5g00251 1237 Pfam Hemerythrin HHE cation binding domain 646 809 IPR012312 -
Rops5g00251 1237 Pfam Hemerythrin HHE cation binding domain 56 178 IPR012312 -
Rops5g00251 1237 Pfam Hemerythrin HHE cation binding domain 304 438 IPR012312 -
Rops5g00251 1237 Gene3D nmb1532 protein domain like 307 455 - -
Rops5g00251 1237 Gene3D nmb1532 protein domain like 47 196 - -
Rops5g00251 1237 CDD Hr-like 50 176 - -
Rops5g00251 1237 SUPERFAMILY RING/U-box 1119 1166 - -
Rops5g00251 1237 Pfam Zinc-ribbon 1168 1225 IPR039512 -
Rops5g00251 1237 MobiDBLite consensus disorder prediction 877 899 - -
Rops5g00251 1237 CDD Hr-like 307 436 - -
Rops5g00251 1237 ProSiteProfiles Zinc finger CTCHY-type profile. 1057 1120 IPR017921 -
Rops5g00251 1237 Pfam Ring finger domain 1120 1162 IPR001841 -
Rops5g00251 1237 SUPERFAMILY CHY zinc finger-like 984 1049 IPR037274 GO:0008270
Rops5g00251 1237 Gene3D - 1192 1233 - -
Rops5g00251 1237 SMART ring_2 1121 1162 IPR001841 -
Rops5g00251 1237 Pfam CHY zinc finger 992 1067 IPR008913 GO:0008270
Rops5g00251 1237 SUPERFAMILY Zinc hairpin stack 1058 1114 IPR037275 -
Rops5g00251 1237 PANTHER RING FINGER AND CHY ZINC FINGER DOMAIN-CONTAINING PROTEIN 1 689 1233 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops5g00251 Rops-Chr5 3765966 3776824 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops5g00251 1 1236 C2H2 Transcription Factor Family AT3G18290 67.701 0.0 1696
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops5g00251 K16276 - gmx:100791354 2195.62
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops2g00199 2 3014471 3027746 Rops5g00251 5 3765966 3776824 PCT