Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops5g00245 ATGTCTATTCCTTTAAAGAGATTCAGCTGTTCTAGTGAAGATGATGATGAACTTAGAAGAGGACCTTGGACTCCCGAAGAGGATGATCTTCTCACCAAATACATTGCTAAACATGGAGAAGGGAGATGGAATTTTCTGGCTAAACATTCAGGATCAAGGAGAACAGGAAAGAGTTGCAGATTAAGATGGCTAAATTATCTAAAGCCAGATATAAAGAGGGGAAATTTAACCTCAGAAGAGCGGCTTTTAATTTTTGAACTCCACTCAAAGTGGGGTAACAGGTGGTCAAAAATTGCCAAACACTTACCAGGGAGAACCGACAATGAAATCAAAAACTATTGGAGAACTAGGATTCAGAAACAAGCAAGACATTTGCAGAATGACACAGATAGAACAGGTTTTGTAGATTTTGTTAAGCATTTAAGGATGATGAGATGTCTTCAGAAAGCAAAAGAATCATCTACTTCAGTCATGTCCATCCAAAACCAACCAATTCCTTTGCCTCTTGATGGTGTTTCTTATTATTCACCAATTGGGACAACACCAACACAAACCCCTTGTGAGGGAACTTGTATGAATGAAGAAGGTCCCAATTATTTGGATCATCAGCATGAGATGAAATCAGATTCTGAGCACAACAATGGTTCATGCATGTCCTCTTCAGAATCAGCAAATTTCCCAAATATGACTCAGTCTTTGGAATATACTACTGGTCAATTTCAGGCCTTAGATAACAGTGGCTTTGGCATCAGTGCATATGATGGTTACAATGAAAATAACAGTGCCTATGAGATGGATGATGCCTTCAACTTGACAACCACAATGGTTTCTGAAGATCTGGAATACCCAATTGGTGATTGCCAAATCTCAGAAAACAATTGGCTAGACAAGGAATTTGCATGTAGCATATGGAACATGAATGAATTATGGGAAGTTAGGAACATACAAGGATGA 954 0.3857 MSIPLKRFSCSSEDDDELRRGPWTPEEDDLLTKYIAKHGEGRWNFLAKHSGSRRTGKSCRLRWLNYLKPDIKRGNLTSEERLLIFELHSKWGNRWSKIAKHLPGRTDNEIKNYWRTRIQKQARHLQNDTDRTGFVDFVKHLRMMRCLQKAKESSTSVMSIQNQPIPLPLDGVSYYSPIGTTPTQTPCEGTCMNEEGPNYLDHQHEMKSDSEHNNGSCMSSSESANFPNMTQSLEYTTGQFQALDNSGFGISAYDGYNENNSAYEMDDAFNLTTTMVSEDLEYPIGDCQISENNWLDKEFACSIWNMNELWEVRNIQG* 318
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops5g00245 317 Gene3D - 75 133 - -
Rops5g00245 317 ProSiteProfiles Myb-like domain profile. 15 67 IPR001005 -
Rops5g00245 317 ProSiteProfiles Myb-like domain profile. 68 118 IPR001005 -
Rops5g00245 317 MobiDBLite consensus disorder prediction 205 224 - -
Rops5g00245 317 SUPERFAMILY Homeodomain-like 18 114 IPR009057 -
Rops5g00245 317 CDD SANT 77 116 IPR001005 -
Rops5g00245 317 Gene3D - 20 72 - -
Rops5g00245 317 SMART sant 72 120 IPR001005 -
Rops5g00245 317 SMART sant 19 69 IPR001005 -
Rops5g00245 317 Pfam Myb-like DNA-binding domain 73 116 IPR001005 -
Rops5g00245 317 Pfam Myb-like DNA-binding domain 20 67 IPR001005 -
Rops5g00245 317 FunFam Myb transcription factor 20 72 - -
Rops5g00245 317 PANTHER MYB TRANSCRIPTION FACTOR-RELATED-RELATED 14 218 IPR044676 GO:0003700|GO:0006355|GO:0043565
Rops5g00245 317 CDD SANT 22 67 IPR001005 -
Rops5g00245 317 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 72 122 IPR017930 -
Rops5g00245 317 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 15 71 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops5g00245 Rops-Chr5 3719780 3721203 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops5g00245 15 159 MYB Transcription Factor Family AT1G68320 65.517 8.35e-66 206
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Rops5g00245 Myb_DNA-binding 3.8e-17 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops5g00245 K09422 - gmx:778042 429.483