Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops5g00235 ATGGAGGAAAATCTACCTCCTGGATTCAGATTCCATCCTACAGATGAAGAACTCATCACATATTATCTTTCAAGGAAAGTGTCTGATACTGGCTTCACATCTAAAGCTGTAGCAGTTGTTGATCTCAACAAGTCTGAACCTTGGGACCTCCCAGGTAAGGCCTCAATGGGAGAGAAGGAATGGTATTTCTTCAGCTTGAGAGATAGGAAGTATCCAACTGGACTTCGAACCAACCGAGCCACTGAATCAGGGTACTGGAAAACCACAGGGAAAGACAAGGAAATTTTTCGTGCTGGTGTTTTGGTAGGAATGAAGAAAACCCTAGTCTTTTATAAGGGTAGAGCTCCAAGGGGTGAGAAAAGCAATTGGGTCATGCACGAATATAGACAAGAAAACAAGCATCACTTTAGACCTTCAAAGGATGAATGGGTGGTTTGTAGGGTTTTCCAAAAGAGCTTAGCAGTCAAAAAACCACAGCAAACATCATCCTCCCAACCCGAGTCACCATGTGACACAGCCTCAATGGTCAATGAATTTGGTGATGTTGAGCTGCCAAATCTAAACAATATAGCAAATTCATCAGGTGGACTTACTAACTTTTCAGGACAAACTTTCAACAGTGATCTCAGTAATGTTAACACAAATATGAACCTCACCATGAATTGGCCAAGTGGGGTTCCCTCTCTTCAATCTCTACCATGGCCTTCTGGTTTGTTGAATCCAAATATTTCTGTAAATTCTTTGCTTCTCAAGGCCTTACAACTTAGGAATTATCAACAAAAAGAAGCTGCAGCTACTGATCATTTTGCATCATATATGACTCAAGGAGGAGTTTCACATGTTGGGACTGACCTAAGTTCAAATCTCAATGCTTCTTCTTCAAAAGTTTTAGAATGTATGCCACAGCATCAGCAGGAGCAACCATTCAATTTGGACTCCATTTGGTGA 948 0.4124 MEENLPPGFRFHPTDEELITYYLSRKVSDTGFTSKAVAVVDLNKSEPWDLPGKASMGEKEWYFFSLRDRKYPTGLRTNRATESGYWKTTGKDKEIFRAGVLVGMKKTLVFYKGRAPRGEKSNWVMHEYRQENKHHFRPSKDEWVVCRVFQKSLAVKKPQQTSSSQPESPCDTASMVNEFGDVELPNLNNIANSSGGLTNFSGQTFNSDLSNVNTNMNLTMNWPSGVPSLQSLPWPSGLLNPNISVNSLLLKALQLRNYQQKEAAATDHFASYMTQGGVSHVGTDLSSNLNASSSKVLECMPQHQQEQPFNLDSIW* 316
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops5g00235 315 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 1 227 - -
Rops5g00235 315 ProSiteProfiles NAC domain profile. 5 151 IPR003441 GO:0003677|GO:0006355
Rops5g00235 315 SUPERFAMILY NAC domain 3 151 IPR036093 GO:0003677|GO:0006355
Rops5g00235 315 FunFam NAC domain-containing protein 100-like 14 155 - -
Rops5g00235 315 Gene3D NAC domain 14 154 IPR036093 GO:0003677|GO:0006355
Rops5g00235 315 Pfam No apical meristem (NAM) protein 6 129 IPR003441 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops5g00235 Rops-Chr5 3588339 3591086 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops5g00235 1 315 NAC Transcription Factor Family AT3G18400 59.509 2.86e-120 346
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Rops5g00235 NAM 1.2e-39 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops5g00235 - - gmx:100787111 539.65