Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops5g00230 ATGAGGTTGAGTTGCAATGGTTGTCGTGTCCTACGTAAAGGGTGCAACCCTGATTGTCCCATTAGACCTTGTCTCCAATGGATCAATTCTCCTACTTCTCAAGCCAACGCCACCCTCTTTCTAGCCAAGTTCTATGGCCGTGCTGGCCTCCTCAATCTTCTCACCAACGCTCCCCCACAACTTCAATCAGATGTTTTTAAATCTTTGCTATACGAAGCTTGTGGTCGAATAGTGAACCCGGTTTTCGGCTCGATCGGCTTGGTCTCAACCGGAAGCTGGCACTTGTGTGAAGCCGCCGTCAAAGCCGTTCTAAGCGGCGCGCCGATTCAGCAAGCTCCCTCCTCCCAGTCAACTTTTCAAGCATGCGATATTCGCCACGTGGCTAAGAGTGGGAAATTGTGCGGCTCTGATCAGCTCCAAAGAGCCAAGTCTAAGCCGAGCCAGTTCAAGCGCCAAGCCAAGAAGTTGAAGCCGAATGTTGACTCAGCCGTGGCTGAATTGCTGATGGGTTGTTTTGGAAGCAAGTTAGAAGATTCAGTGATTCGTGACTCAGTGAGTCGTGACTCGGGTTCTGGGGTGAGTGAGCATAGAAGCATTGGTGGGGAAGCTGATAGCAGCTCCATTGAGAGTGTGGAGCCGGCTCGAGCCGATGATGTAGAACTTGAGCTAGATTTGACTTTGGGGTGGGGCTCAATTAAAAAACATGATGATACCTATAGCTTTAGGGATTGA 732 0.5014 MRLSCNGCRVLRKGCNPDCPIRPCLQWINSPTSQANATLFLAKFYGRAGLLNLLTNAPPQLQSDVFKSLLYEACGRIVNPVFGSIGLVSTGSWHLCEAAVKAVLSGAPIQQAPSSQSTFQACDIRHVAKSGKLCGSDQLQRAKSKPSQFKRQAKKLKPNVDSAVAELLMGCFGSKLEDSVIRDSVSRDSGSGVSEHRSIGGEADSSSIESVEPARADDVELELDLTLGWGSIKKHDDTYSFRD* 244
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops5g00230 243 ProSiteProfiles LOB domain profile. 3 109 IPR004883 -
Rops5g00230 243 PANTHER LOB DOMAIN-CONTAINING PROTEIN 38 3 201 - -
Rops5g00230 243 MobiDBLite consensus disorder prediction 183 214 - -
Rops5g00230 243 Pfam Lateral organ boundaries (LOB) domain 4 102 IPR004883 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops5g00230 Rops-Chr5 3546810 3548227 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops5g00230 1 227 AS2 family AT3G02550 43.333 8.22e-60 188
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Rops5g00230 LOB 1.3e-23 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops5g00230 - - gmx:100802646 295.049