Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops5g00229 ATGAAAGCTGCAAGTGCATTGGGAGCCAAGACAGCAAGAGCTTGTGATAGCTGCCTACGTGTAAGAGCAAGGTGGTATTGTGCAGCTGATGATGCTTTCCTTTGCCATGGTTGTGATAACTTGGTTCACTCAGCAAACCAGTTAGCTAGCAGGCATGAAAGGGTTAGGCTTCAAACTGCTTCCTCTAAGGTCAACTACTCAGTGACCCTTGATAAGGTAAACTCACAGTCACAAACATGGCATAGTGGATTCACACGCAAGGCAAGAACCCCACGTCATAACAAGCACTTTTTGGTGCAACAACAACACAAAGATGCAAAAGTAGAAGATGAAGTGGTTTTCAATGAAACCAATACCCTTCTCCCCCTTGTGCCTGAGTTGGGAAGTGAAGAACCACTGCTAGATGATGAGACTGAGGAGCAACTTCTCTGTCGTGTGCCTGTGTTTGATGAAGAGCTTTGCAGCATATACAATGAAGTGAAGGATGAGAAGTTGGACACCACAATGAAAAATGATGTTGCTGATGAAGAAGGCTTTGATTTGAACAACTTTTCTTCAGAGTTTCTTCCATCAGATCTTGCTGAGTTTGCTGCTGATGTTGAAAGCTTTCTTGGAAATGGGCTTGATGAGGATTCATCTGGCCACATGAAAGGATCAGAATTGTTTGGTTGCAAAGAGGAAAATGAAATAGATGCATATGTTAATGGACTTAGAGACAAAGGTGCAATGGTGAAGGTTAAGGATGAAGAATTTAATGCTGATACAGCTTGTCATTTGGATTCAATTCTTGACATGAATAGTGACTTCTTTGATTGGAACATTGACTCAGAATCACTGGCAGCAGCTTCACACGAAGAGGAGGAAAAGGTGGTGAATGGTGGTAGTACCAGTGATGTGGGAACTAAGAAAAAGGAGAGTTTTTTGAGGCTAAACTATGAAGAGGTTACTACTGCTTGGGCCAGCCAAGGTTCTCCATGGACAACAGGAAGCCCACCTAAGTTCAACTCTGATGACTATTTGGATTTGATAGGCGCAGATGTACAATGCTCTTATGGGGAAGTAAGGAGCTTAATGAGGCTCCCAATAAGGGATGCAGATGGGGGAAGAGAAGCAAGAGTTTCAAGGTACCGAGAGAAGAGAAGAACACGTTTATTTGCAAAGAAGATAAGGTATGAAGTAAGGAAATTGAATGCAGAGAAAAGACCAAGAATGAAAGGTAGATTTGTCAAGAGGACATCCTTTGTTGGAGCCACTTCTTTGCAACCTCAATTACCACTCACATCAATGTGA 1290 0.4256 MKAASALGAKTARACDSCLRVRARWYCAADDAFLCHGCDNLVHSANQLASRHERVRLQTASSKVNYSVTLDKVNSQSQTWHSGFTRKARTPRHNKHFLVQQQHKDAKVEDEVVFNETNTLLPLVPELGSEEPLLDDETEEQLLCRVPVFDEELCSIYNEVKDEKLDTTMKNDVADEEGFDLNNFSSEFLPSDLAEFAADVESFLGNGLDEDSSGHMKGSELFGCKEENEIDAYVNGLRDKGAMVKVKDEEFNADTACHLDSILDMNSDFFDWNIDSESLAAASHEEEEKVVNGGSTSDVGTKKKESFLRLNYEEVTTAWASQGSPWTTGSPPKFNSDDYLDLIGADVQCSYGEVRSLMRLPIRDADGGREARVSRYREKRRTRLFAKKIRYEVRKLNAEKRPRMKGRFVKRTSFVGATSLQPQLPLTSM* 430
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops5g00229 429 Pfam CCT motif 369 411 IPR010402 GO:0005515
Rops5g00229 429 ProSiteProfiles Zinc finger B-box type profile. 10 57 IPR000315 GO:0008270
Rops5g00229 429 Pfam B-box zinc finger 12 55 IPR000315 GO:0008270
Rops5g00229 429 ProSiteProfiles CCT domain profile. 369 411 IPR010402 GO:0005515
Rops5g00229 429 CDD Bbox1_BBX-like 14 57 - -
Rops5g00229 429 SMART bboxneu5 10 57 IPR000315 GO:0008270
Rops5g00229 429 PANTHER CCT MOTIF FAMILY PROTEIN, EXPRESSED 4 413 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops5g00229 Rops-Chr5 3530430 3532665 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops5g00229 4 411 C2C2-CO-like Transcription Factor Family AT1G25440 42.529 4.82e-89 275
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-CO-like Rops5g00229 zf-B_box 1.7e-05 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops5g00229 - - gmx:100802113 530.02
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops2g00218 2 3225961 3227508 Rops5g00229 5 3530430 3532665 PCT