Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops5g00227 ATGTCATGCTTTCCTAAGCAAACACCGAAACAAGGATTGAAATGTCAGAGAGGAATAGAAAAAGTTCCATCCAAAGATGAAAACTTGAACACTCTGAGGAAAATTAGAATTGTGTACAATGACCCTGATGCTACAGATTCTTCAAGTGAAGAAGAAGATAAGTTTTTGAGGAGTGACAATCAATTAAATGGTTATAAGCGGATTGTAAAGGAAATTTTGGTTCCATGTAGGCATACCATATTATGTGCTGAAAATTCTTCGCAACTTGATGTCAGCAGAGAAAAGATCAAAGCAAGTCCCAGACTTTTTTACAGCAGAAGAAACAAGAAACCATCCAGCGTGTACAAAGGTGTTCATAGAAGGAAATGGGGGAAATATGTAGCAGAAATCCGAGACCCTTTTCGAGGTGTAAGACTATGGCTTGGTACTTTTGATACTGAAGAAGAGGCTGCTATGGCTTATGAGAATAAGAAGAATGAATTTGAAAGGTCATTGTTAGCTTTGAGGAAAAGGGATGATGCATTGGCTTCAGAAGATGTCAAAGAAGTGTTGTTTCATCCATCTCCATCATCTGTACTTGATGTTAGTGCTACAAAAGCTACACTAGATATTGATGATATTAATGTTTCAGTCAAAGAAAAAGTCAATGTGGAAACATATGGTGAAGGAGGAGGCAATGTTGTGGAACTAGTTCATGGAGAAGATCATTCAGTTCAACATTTGCTAGATGATCCAATTGTGCCATCATTGGTTGGTCATGATTCTTATTTGGATGAAGTGGAGAATGGAGCAATGCTGCATGGTGATGGCTTTTATAACTTGTTCGACCATGACATCAATGATGGTTCAATGTGGAATGTGGAAAATGGGGAGGTTAGCATTCTCCCCCCTGTGGATAGTGCTTTTAATGATCTTGAGTTAGCTTGGATTGATGAAACTCAAAATTGGGAATGCCCCCTAAAATTTTGCAGTTAG 975 0.3826 MSCFPKQTPKQGLKCQRGIEKVPSKDENLNTLRKIRIVYNDPDATDSSSEEEDKFLRSDNQLNGYKRIVKEILVPCRHTILCAENSSQLDVSREKIKASPRLFYSRRNKKPSSVYKGVHRRKWGKYVAEIRDPFRGVRLWLGTFDTEEEAAMAYENKKNEFERSLLALRKRDDALASEDVKEVLFHPSPSSVLDVSATKATLDIDDINVSVKEKVNVETYGEGGGNVVELVHGEDHSVQHLLDDPIVPSLVGHDSYLDEVENGAMLHGDGFYNLFDHDINDGSMWNVENGEVSILPPVDSAFNDLELAWIDETQNWECPLKFCS* 325
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops5g00227 324 CDD AP2 113 175 IPR001471 GO:0003700|GO:0006355
Rops5g00227 324 ProSiteProfiles AP2/ERF domain profile. 114 171 IPR001471 GO:0003700|GO:0006355
Rops5g00227 324 PRINTS Ethylene responsive element binding protein signature 137 153 IPR001471 GO:0003700|GO:0006355
Rops5g00227 324 PRINTS Ethylene responsive element binding protein signature 115 126 IPR001471 GO:0003700|GO:0006355
Rops5g00227 324 Pfam AP2 domain 113 162 IPR001471 GO:0003700|GO:0006355
Rops5g00227 324 Gene3D AP2/ERF domain 114 165 IPR036955 GO:0003700|GO:0006355
Rops5g00227 324 Coils Coil 144 171 - -
Rops5g00227 324 SUPERFAMILY DNA-binding domain 113 160 IPR016177 GO:0003677
Rops5g00227 324 SMART rav1_2 114 164 IPR001471 GO:0003700|GO:0006355
Rops5g00227 324 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 33 164 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops5g00227 Rops-Chr5 3516545 3517519 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops5g00227 32 162 AP2-EREBP Transcription Factor Family AT1G68550 45.038 2.41e-23 96.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Rops5g00227 AP2 9.8e-11 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops5g00227 - - gmx:102661579 409.453
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops5g00227 5 3516545 3517519 Rops5g00227 5 3516545 3517519 ECH