Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops5g00186 ATGGATTTAGAAGAGAAGTTCCTTGCTAAAGTTTCTGGTGTTCAAAGCCTTTCGTTCAGTGTGCAAAGTACTCCAGAAAAAAAAGGTCATTCAGATGATGCTTCAAGAAGTTCAGAACTCCTTCAGGAGCTTGTGAAATCTGGCTCAAAGAAGGAACTTCTTCGAACTTGCTTTGATAAGGACAAAAAGAACGTTTCTTCAAAAAGCAAGATGACTGAAACTAAGCCAACTAGTAAGGTTATCAAGAAACAGGACTCAAAAAAGGTTTCTGGTCTCAGCAATCAGCCTTCTAAGAAGCAGCATCGCAAAGGTGAAAACCCCACGCGATTCTTATCTCCTGACCCGCCTTCTGATTTTGGACATTCAAACTCCTGGATATGTAAAAATTCTGCTTGTAGAGCGGTTCTATCTAAAGATGACACATTTTGTAGAAGGTGCTCTTGCTGTATTTGCCACCTTTTTGATGATAACAAGGATCCTAGTCTTTGGTTGGTATGCACGTGTGAATCTGCTCAAGGGGACTCTTGTGGGTTGTCTTGCCATATTGAGTGTGCCCTTCAACATGAAAAAGTCGGAGTTGTTGATCATGGACAACTGATGCAACTGGATGGCGGTTATTGTTGTGCCTCCTGTGGTAAAGTTACTGGGATACTTGGGTGTTGGAAGAAGCAGTTAAATATAGCAAAAGATGCTCGTCGAGTAGATGTATTATGTTATAGGATATATTTGAGCTACAGGCTTCTAAATGGGACTTCGAGATTTAAAGAATTGCATGAAATGGTACAAGAGGCAAAGGCTAAACTGGAAACCGAAGTTGGTCCAGTTAATGGAGTTTCTGCCAAGATGGCACGCGGCATTGTCAGTAGACTCCCTATTGCCAGTGATGTACAGAAACTATGCTCTCTTGCTATTGAGAAAGCTGACAAGTGGTTGGCCACTGTAAATCCTGAATCCAAAGAGGGTTCACTTCCTGCTGCATGCAAGTTTGTTTTTGAAGAGGTAACAGCTTCGTCAGTCAAAATAATTTTAATTGAAATGTCAAATGTATCTTCTGAGGACTTTAAGGGATACAAGCTCTGGTATTACAAGAGTAGGGAAGAATCACACATGAAAGATCCTGTCTGTGTGTTTCCCAAAGCTCAGAGGAGGATTTTGATATCCAACCTCCAGCCTTGCACAGAATATTCTTTTCGGATTATATCTTTCACAGATTTGGGTGACCTTGGTCATTCTGAGGCTAAGTGTTTCACCAAGAGCATTGAGATATTGGAAACAAATCCATCCTCAGTTGCTATGAATCATAAAAAGGAGAAGCTTGAAACTGGAGGCAATTCTTCTGGCTCCAAAATGGAGTCTGATCCCACAATGGCAGACTCCGGATTCAAGGTTCGAGACCTTGGAAAAATACTGCATCTTGCTTGGGCTCAAGAACAAGGTTGCTTTGAGGGGTTTTGCCATGTGGATATGAAAAATTGCTGTGGACAAAGTGAAATGATCAAGCCTAAGACCAACCCAGAAGAGCAATTGCCTTCAGTTTCAAGAGACCTTGATCTAAATGTTGTTTCTGTGCCTGATTTGAATGAAGAACTCACTCCTCCTTTTGAGTCTTCAAGAGATGAAGATAATGGTTGCACTTTGCAGCAGGCTGTTGAGGCAGATGATGATGCTGCTTCTCATGATGTAGAGAAAAATTGTATAGCAAGATCACATGGTAGTGGTGGTTCTTCCCAAACATGGACCCATGGACCAACTGGAGAAGTGCCAGCTGTTGACTCTCGTGTAGATGCCTGTAGGAAAAGGGTAGCAAGCACAAATGAAGAGACACATGATTGTGATAGCACTTTGATAAATGGATCTCCTTTACATGCATCTGATGGTTCATTCTCCTTAGATGAGAACTTTGAGTATTGTGTTAAAGTAATTCGTTGGCTAGAATGTCAGGGTCATATCAAACAAGAATTTAGGTTGAAATTGCTGACATGGTTTAGTTTGAGGTCAACTGAGCAAGAACGTAGGGTGGTTAATACTTTCATTCAAACTCTTATTGATGATCCAAGTAGTTTGGCAGGGCAACTAGTTGACTCATTTTCTGATATTATATCCAACAAGAGGCCAAGAAATGGGTTCTGTAATAAGGCTGTGGCATCAAATTAA 2154 0.4109 MDLEEKFLAKVSGVQSLSFSVQSTPEKKGHSDDASRSSELLQELVKSGSKKELLRTCFDKDKKNVSSKSKMTETKPTSKVIKKQDSKKVSGLSNQPSKKQHRKGENPTRFLSPDPPSDFGHSNSWICKNSACRAVLSKDDTFCRRCSCCICHLFDDNKDPSLWLVCTCESAQGDSCGLSCHIECALQHEKVGVVDHGQLMQLDGGYCCASCGKVTGILGCWKKQLNIAKDARRVDVLCYRIYLSYRLLNGTSRFKELHEMVQEAKAKLETEVGPVNGVSAKMARGIVSRLPIASDVQKLCSLAIEKADKWLATVNPESKEGSLPAACKFVFEEVTASSVKIILIEMSNVSSEDFKGYKLWYYKSREESHMKDPVCVFPKAQRRILISNLQPCTEYSFRIISFTDLGDLGHSEAKCFTKSIEILETNPSSVAMNHKKEKLETGGNSSGSKMESDPTMADSGFKVRDLGKILHLAWAQEQGCFEGFCHVDMKNCCGQSEMIKPKTNPEEQLPSVSRDLDLNVVSVPDLNEELTPPFESSRDEDNGCTLQQAVEADDDAASHDVEKNCIARSHGSGGSSQTWTHGPTGEVPAVDSRVDACRKRVASTNEETHDCDSTLINGSPLHASDGSFSLDENFEYCVKVIRWLECQGHIKQEFRLKLLTWFSLRSTEQERRVVNTFIQTLIDDPSSLAGQLVDSFSDIISNKRPRNGFCNKAVASN* 718
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops5g00186 717 MobiDBLite consensus disorder prediction 435 456 - -
Rops5g00186 717 MobiDBLite consensus disorder prediction 568 587 - -
Rops5g00186 717 MobiDBLite consensus disorder prediction 15 47 - -
Rops5g00186 717 PANTHER VIN3-LIKE PROTEIN 2-RELATED 18 712 IPR044514 GO:0010048|GO:0040029
Rops5g00186 717 MobiDBLite consensus disorder prediction 26 47 - -
Rops5g00186 717 CDD FN3 328 407 IPR003961 GO:0005515
Rops5g00186 717 Gene3D Immunoglobulins 319 420 IPR013783 -
Rops5g00186 717 MobiDBLite consensus disorder prediction 63 116 - -
Rops5g00186 717 ProSiteProfiles Fibronectin type-III domain profile. 323 422 IPR003961 GO:0005515
Rops5g00186 717 Pfam PHD - plant homeodomain finger protein 127 245 IPR032881 -
Rops5g00186 717 MobiDBLite consensus disorder prediction 63 86 - -
Rops5g00186 717 MobiDBLite consensus disorder prediction 569 583 - -
Rops5g00186 717 SUPERFAMILY Fibronectin type III 329 407 IPR036116 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops5g00186 Rops-Chr5 2887460 2896585 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops5g00186 123 708 PHD Gene Family AT3G24440 49.249 0.0 540
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops5g00186 - - gmx:100780157 1292.72
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops5g00186 5 2887460 2896585 Rops5g00186 5 2887460 2896585 ECH
Rops2g00256 2 4027991 4035304 Rops5g00186 5 2887460 2896585 PCT