Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops5g00180 ATGGGTTCCATGGGCAACCTGGAGGTTCATCATGGGGTGAACTTCTCAAACCAAAGAGGGTTTCTCACAAAATTCAAATCTGGGTTGAAAGAAACGTTCTTCCCTGATGATCCTTTCAGGCAGTTCAAGAATGAAGAGAAGCCAATGCGTAGGGTCATCAAAGGGGTGCAATACTTTGTTCCAATCTTTGAGTGGCTCCCTAATTACACTTGGCGTCTCTTGTGTTCTGACTTAGTCGCTGGCCTTACTATCACTAGCCTTGCCATCCCTCAAGGCATAAGTTATGCCAAACTTGCCAACCTTCCTCCCATCATTGGCCTTTATTCCAGCTTTGTCCCACCTCTAGTGTATGCTGTTTTTGGGAGTTCTAGGCACATGGCAGTGGGGACTTTAGCAGCAGCTTCATTGCTTATTGGTCAAACTATATCAACTGCAGCAAACCCAGAAACAGAACAAGAGTTGTATCTTCATTTGATTTTCACAACTACCTTTATCACTGGTATTTTCCAAGCTTGCTTGGGTTTTTTCAGGCTTGGGATATTGGTGGATTTCTTTTCCCATTCTACCATCACTGGCTTCATGGGAGGGACAGCAATAATTCTCATCCTACAACAACTAAAGGGTATATTTGGCATGAAACATTTTTCAACCAAAACCAACATTATAGCAGTGGTGAAGAGCATCATCATCAATAGACATGAGATAAGATGGGAAACCACGGTTCTTGGAGTGATCTTCATTGCTTTCCTGCAATTTACAAGGCACGTGAGGAATAGGAAACCAAAACTCTTTTGGGTATCAGCTATAGCTCCAATGACAACTGTAATAGTTGGTAGCGTTTTTACGTACCTGGTCAAGGGCCAACATCATGGAATTCAAATTGTCGGTCATCTAGATAAAGGGTTGAACCCTTTGTCCATTCAGTATTTCAACTTTGACAGTAAATATTTACCAGCAGTGGTGAAAGCTGGCCTAATCACTGGCGTCTTGTCATTGGCGGAAGGAATAGCAATAGGAAGAAGCTTTTCTGTTACTGATAATACACCTCATGATGGGAACAAAGAGATGATAGCTTTTGGCCTTATGAACTTATGTGGTTCTTTTACTTCATGTTACATGACCAGTGGACCATTTTCCAAGACGGCTGTGAATTACAATGCAGGGTGTAAGACTGCAATGGCAAACGTGGTACAAGCAATCCTAATGGCACTCACACTGCAATTTTTGGCACCACTATTTGGTTACACCCCTCTTGTTGCTCTATCAGCTATCATTGCATCTGCCATGATAGGGCTGATTAATTATACCGAAGCTATCTATCTCTTTAAAGTTGACAAGTTTGATTTCATTATTTGCATGGGTGCCTTCCTTGGAGTCACCTTTTTAAGCATGGATGTTGGCCTCATGATCTCTGTTGGACTTGGTATTCTTAGAGCACTGTTATATGTGGCTAGACCTGCGACATGCAAGCTTGGAAAGATACCTAATTTAGGTTTATATCGAGATGTTGAGCAATATACTGCTTCAACATTCCCAGGAGTTATAGTTATACAACTTGGTTCTCCCGTTTACTTTTCAAATGCTTTGTATGTCAAAGAAAGGATTTTGAGGTATGTTAGAAGTGAGCAAAGCTCAAATGGAGATATTGTTGAGAACATCATACTCGATTTGTCAGGAGTGACATCCATTGACACAACTGCTATTGAAGGATTGTTGGAGACAAATAAAATATTGGAAGGGAATGGAATTAAGATGTCTTTGGTAAACCCAAGGTTGGAGGTAATGGAGAAGTTAATAGCATCCAAGTTTGTTGAAAAGATTGGGAAGGAGTCGTTCTATCTAACATTGGATGATGCAGTGATGGCATGTCAATATTCACTTCGTACAACAAAGGCAAATAATAATGAAGAGACAATTCAAGAAACTTGTCACGCATAA 1938 0.4076 MGSMGNLEVHHGVNFSNQRGFLTKFKSGLKETFFPDDPFRQFKNEEKPMRRVIKGVQYFVPIFEWLPNYTWRLLCSDLVAGLTITSLAIPQGISYAKLANLPPIIGLYSSFVPPLVYAVFGSSRHMAVGTLAAASLLIGQTISTAANPETEQELYLHLIFTTTFITGIFQACLGFFRLGILVDFFSHSTITGFMGGTAIILILQQLKGIFGMKHFSTKTNIIAVVKSIIINRHEIRWETTVLGVIFIAFLQFTRHVRNRKPKLFWVSAIAPMTTVIVGSVFTYLVKGQHHGIQIVGHLDKGLNPLSIQYFNFDSKYLPAVVKAGLITGVLSLAEGIAIGRSFSVTDNTPHDGNKEMIAFGLMNLCGSFTSCYMTSGPFSKTAVNYNAGCKTAMANVVQAILMALTLQFLAPLFGYTPLVALSAIIASAMIGLINYTEAIYLFKVDKFDFIICMGAFLGVTFLSMDVGLMISVGLGILRALLYVARPATCKLGKIPNLGLYRDVEQYTASTFPGVIVIQLGSPVYFSNALYVKERILRYVRSEQSSNGDIVENIILDLSGVTSIDTTAIEGLLETNKILEGNGIKMSLVNPRLEVMEKLIASKFVEKIGKESFYLTLDDAVMACQYSLRTTKANNNEETIQETCHA* 646
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops5g00180 645 PANTHER SULFATE TRANSPORTER 23 626 IPR001902 GO:0016020|GO:0055085
Rops5g00180 645 Gene3D STAS domain 485 626 IPR036513 -
Rops5g00180 645 CDD STAS_SulP_like_sulfate_transporter 508 616 - -
Rops5g00180 645 NCBIfam sulfate permease 61 619 IPR001902 GO:0016020|GO:0055085
Rops5g00180 645 ProSitePatterns SLC26A transporters signature. 103 124 IPR018045 GO:0008271|GO:0008272
Rops5g00180 645 Pfam STAS domain 507 619 IPR002645 -
Rops5g00180 645 SUPERFAMILY SpoIIaa-like 505 623 IPR036513 -
Rops5g00180 645 Pfam Sulfate permease family 74 453 IPR011547 GO:0016020
Rops5g00180 645 ProSiteProfiles STAS domain profile. 504 623 IPR002645 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops5g00180 Rops-Chr5 2779934 2785088 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops5g00180 11 631 Inorganic Solute Cotransporters AT5G19600 64.469 0.0 812
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops5g00180 K17471 - gmx:100789107 971.074
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops5g00180 5 2779934 2785088 Rops5g00180 5 2779934 2785088 ECH