Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops5g00179 ATGCTTTCAACCCAGAACACCTTTCTTTCAGCGACACAGAGAAAAGGGGAGAGAGAAAGAGAGGAGAAATCGTGTCTGAAAATTGAAAAATTCCCCCAAATTGCACGCTCCGCAAAAACCCTAACCCAATTCCACGCACCCTTTGTTCAAATCTCTCCCAATTCCCCTCCCCCTTTTGTTCCCCAAATTCGATTTCCCCCCTATTCCTCGAATCAGAGAACCCTACATAACCAATTAGGGTTTTCACGCTATATCCAATTTCCCAATATTCAAGAATCCATGGACGACATGGAAGATGACGCAAGGTACCCTCCAAAGTCCTTCCCTTTGAATCGCCAAAACCCTTCCCATCGCCAAAAACACCCAATTCGAACCCCTCCATATCACCGACCACCAACCACTCGCTACGAGGAAGACGAAGATGACGAGGAAGAGGAGGGAAACGAGGAATTCGACGATTACGATGACGAAGGAGGAAATGGGTATGGCGGTAATTTCGAAGAAGATGAAGGGTTCTCAAGAAAAAGGAAGGTACGAGGTTCTTCCTCTATTTCCAACTACGAATTTGCACCACGTGCGAAATTCTCGTACGGGAATCGAGGTTCTTCTTCTTCTGAGGAATGGACAGAGCATGCAACGTTTGTGTTGTTAGAGGTTTGGGGTGACAAGTTTCTTCAACTTGGGAGGAATAGTTTAAGGTCTGAGGAATGGCTTGATGTTGCTGAAAAGGTTTCCGAGGAATTGAAGGTTGAAAAAACGGTTGCACAGTGTAAAAGTGTGTTGGATAAGCTTAAAAGAAGGTATAAGAAAGAGAAAGCTAAAATTGATGAGATGGGTTTGAGTGTTAATTCTTGTAAATGGCCTTTGTTTAAGAAAATGGATATGTTGATGGCTTCATCTGCAAGGCAAGAGTATGGTCTTGCTTGTGGGGTTGATTCTGGTGAATATGTGTTCATGAATACTAGGGTGTATTTGAATAGTTCTAACGGTTTTGATGAGATGAGGGATAGTCCTGGAGAGTCTGAAACCTCGGAGGATGATGATTACGATGGTGTTGCGGCCGGTGATGGTGATGATGAGGATGATGAGACTTCATTTAGGGTGTTGGCTGATTCTATTCAGAAGTTTGGGAAAATATATGAGAAGATTGAGAAGACTAAGAGGCAGCAAATGATGGAGTTGGAGAAGATGAGGTTGGATTTTAATAGGGAATTGGAGCTGCAGAAGAAGCAGATTTTGGAAAGGGCTCAGACTGAAATTGCAAAAATACAGGAAGGTGATGAGGAGGACTCGGATTCTTCTGCAGAGAATCTCAGTGAATAA 1323 0.4339 MLSTQNTFLSATQRKGEREREEKSCLKIEKFPQIARSAKTLTQFHAPFVQISPNSPPPFVPQIRFPPYSSNQRTLHNQLGFSRYIQFPNIQESMDDMEDDARYPPKSFPLNRQNPSHRQKHPIRTPPYHRPPTTRYEEDEDDEEEEGNEEFDDYDDEGGNGYGGNFEEDEGFSRKRKVRGSSSISNYEFAPRAKFSYGNRGSSSSEEWTEHATFVLLEVWGDKFLQLGRNSLRSEEWLDVAEKVSEELKVEKTVAQCKSVLDKLKRRYKKEKAKIDEMGLSVNSCKWPLFKKMDMLMASSARQEYGLACGVDSGEYVFMNTRVYLNSSNGFDEMRDSPGESETSEDDDYDGVAAGDGDDEDDETSFRVLADSIQKFGKIYEKIEKTKRQQMMELEKMRLDFNRELELQKKQILERAQTEIAKIQEGDEEDSDSSAENLSE* 441
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops5g00179 440 Pfam Myb/SANT-like DNA-binding domain 206 295 IPR044822 -
Rops5g00179 440 MobiDBLite consensus disorder prediction 96 177 - -
Rops5g00179 440 MobiDBLite consensus disorder prediction 1 23 - -
Rops5g00179 440 MobiDBLite consensus disorder prediction 137 157 - -
Rops5g00179 440 PANTHER TRIHELIX TRANSCRIPTION FACTOR ASIL2 198 428 IPR044823 -
Rops5g00179 440 MobiDBLite consensus disorder prediction 329 363 - -
Rops5g00179 440 Coils Coil 254 281 - -
Rops5g00179 440 Gene3D - 208 270 - -
Rops5g00179 440 MobiDBLite consensus disorder prediction 339 363 - -
Rops5g00179 440 MobiDBLite consensus disorder prediction 420 440 - -
Rops5g00179 440 Coils Coil 380 422 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops5g00179 Rops-Chr5 2736638 2737960 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops5g00179 356 425 Trihelix Transcription Factor Family AT3G14180 40.000 5.81e-09 55.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Trihelix Rops5g00179 Myb_DNA-bind_4 1.3e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops5g00179 - - gmx:100790166 434.106
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops5g00179 5 2736638 2737960 Rops5g00179 5 2736638 2737960 ECH