Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Rops5g00176 | ATGCCAACTCGATCAACAGGAGCCATAACCCAAGACTGGGAGCCAGTGGTGCTACACAAGTCGAAGCCAAAGGCGCAGGAGCTTCGGAATCCGAAGGCCGTGAACCAGGCGTTGCGGACCGGAGCTGAGGTGGTGACGGTGAAGAAGTTCGACGCCGGTTCGAACCGGAAAACCGCCGGACCGGCTTTGAACGCGAGGAAGTTGGACGAAGGAACCGAACCGGCAGCGCTGGAGCGCGTGGCGGGGGAAGTGAGGCACGCGATTCAGAAGGCGCGTTTGGAGAAGAAGATGAGTCAGGCTGAACTTGCGAAACAGATAAACGAACGAACGCAGGTGGTGCAGGAGTATGAGAATGGAAAAGCCGTGCCTAACCAGGCCGTGCTGGCGAAGATGGAGAGGGTTCTAGGTGTGAAGCTTAGGGGGCAAAATAGGAAAGTGAAGTGA | 444 | 0.5721 | MPTRSTGAITQDWEPVVLHKSKPKAQELRNPKAVNQALRTGAEVVTVKKFDAGSNRKTAGPALNARKLDEGTEPAALERVAGEVRHAIQKARLEKKMSQAELAKQINERTQVVQEYENGKAVPNQAVLAKMERVLGVKLRGQNRKVK* | 148 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Rops5g00176 | 147 | Pfam | Helix-turn-helix | 88 | 140 | IPR001387 | - | |
Rops5g00176 | 147 | SMART | mbf_short4 | 87 | 142 | IPR001387 | - | |
Rops5g00176 | 147 | Coils | Coil | 88 | 110 | - | - | |
Rops5g00176 | 147 | ProSiteProfiles | Cro/C1-type HTH domain profile. | 88 | 142 | IPR001387 | - | |
Rops5g00176 | 147 | SUPERFAMILY | lambda repressor-like DNA-binding domains | 85 | 139 | IPR010982 | GO:0003677 | |
Rops5g00176 | 147 | Pfam | Multiprotein bridging factor 1 | 11 | 80 | IPR013729 | - | |
Rops5g00176 | 147 | FunFam | Multiprotein bridging factor 1 | 72 | 145 | - | - | |
Rops5g00176 | 147 | CDD | HTH_XRE | 87 | 139 | IPR001387 | - | |
Rops5g00176 | 147 | Gene3D | - | 71 | 147 | IPR010982 | GO:0003677 | |
Rops5g00176 | 147 | PANTHER | ENDOTHELIAL DIFFERENTIATION-RELATED FACTOR 1 MULTIPROTEIN BRIDGING FACTOR 1 | 11 | 143 | - | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Rops5g00176 | Rops-Chr5 | 2714955 | 2715604 | Transposed |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
TR | MBF1 | Rops5g00176 | MBF1 | 5e-20 | No_clan |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Rops5g00176 | K03627 | - | twl:119996545 | 232.646 |
Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
---|---|---|---|---|---|---|---|---|---|
Rops5g00176 | 5 | 2714955 | 2715604 | Rops5g00176 | 5 | 2714955 | 2715604 | ECH |