Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops5g00176 ATGCCAACTCGATCAACAGGAGCCATAACCCAAGACTGGGAGCCAGTGGTGCTACACAAGTCGAAGCCAAAGGCGCAGGAGCTTCGGAATCCGAAGGCCGTGAACCAGGCGTTGCGGACCGGAGCTGAGGTGGTGACGGTGAAGAAGTTCGACGCCGGTTCGAACCGGAAAACCGCCGGACCGGCTTTGAACGCGAGGAAGTTGGACGAAGGAACCGAACCGGCAGCGCTGGAGCGCGTGGCGGGGGAAGTGAGGCACGCGATTCAGAAGGCGCGTTTGGAGAAGAAGATGAGTCAGGCTGAACTTGCGAAACAGATAAACGAACGAACGCAGGTGGTGCAGGAGTATGAGAATGGAAAAGCCGTGCCTAACCAGGCCGTGCTGGCGAAGATGGAGAGGGTTCTAGGTGTGAAGCTTAGGGGGCAAAATAGGAAAGTGAAGTGA 444 0.5721 MPTRSTGAITQDWEPVVLHKSKPKAQELRNPKAVNQALRTGAEVVTVKKFDAGSNRKTAGPALNARKLDEGTEPAALERVAGEVRHAIQKARLEKKMSQAELAKQINERTQVVQEYENGKAVPNQAVLAKMERVLGVKLRGQNRKVK* 148
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops5g00176 147 Pfam Helix-turn-helix 88 140 IPR001387 -
Rops5g00176 147 SMART mbf_short4 87 142 IPR001387 -
Rops5g00176 147 Coils Coil 88 110 - -
Rops5g00176 147 ProSiteProfiles Cro/C1-type HTH domain profile. 88 142 IPR001387 -
Rops5g00176 147 SUPERFAMILY lambda repressor-like DNA-binding domains 85 139 IPR010982 GO:0003677
Rops5g00176 147 Pfam Multiprotein bridging factor 1 11 80 IPR013729 -
Rops5g00176 147 FunFam Multiprotein bridging factor 1 72 145 - -
Rops5g00176 147 CDD HTH_XRE 87 139 IPR001387 -
Rops5g00176 147 Gene3D - 71 147 IPR010982 GO:0003677
Rops5g00176 147 PANTHER ENDOTHELIAL DIFFERENTIATION-RELATED FACTOR 1 MULTIPROTEIN BRIDGING FACTOR 1 11 143 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops5g00176 Rops-Chr5 2714955 2715604 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR MBF1 Rops5g00176 MBF1 5e-20 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops5g00176 K03627 - twl:119996545 232.646
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops5g00176 5 2714955 2715604 Rops5g00176 5 2714955 2715604 ECH