Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops5g00171 ATGGAAAATCTCAGCAATGGCCACAGCCACATTGACTCCTTTGTCCAGATTCCAAAAGTAAAGTTTACAAAGCTTTTCATCAATGGAGAATTCGTGGACTCAGTTTCAGGAAAAACGTTTGAGACTGTGGATCCAAGAACAGAGGAAGTGATTACAGAAATAGCAGAGGCTACCAAAGAAGATGTTGACATTGCTGTGAAGGCTGCACGTAAAGCATTTGATTCTGGTCCATGGCCACGCATGACTGGTGCTGAGAGAGCAAAGATTATGCTGAAGTGGGCAGAGCTAATTGAACAGAACCTAGAAGAAATAGCAGCATTGGATACCATTGATGGTGGGAAGTTACATAGTTGGTGTAAGGCTGTGGATGTTCCTGAAGCAACCAATATCCTGCGTTACTATGCTGGTGCTGCTGATAAAATTCATGGAGAAGTGTTCAAAACATCAAGGGACCTTCACTTGTATACACTGATGGAACCAATTGGTGTTGTTGGTCACATTATCCCTTGGAATTTCCCCACCATCATGTTCTTTGCTAAGGCTAGCCCTGCCTTGGCTGCTGGTTGCACCATGGTCCTCAAGCCTGCTGAGCAAACACCTCTCTCATCACTCTTTTATGCTCATCTTGCTAAGCTGGCTGGTATCCCAGATGGTGTGCTCAATGTATTACCTGGATTTGGCTCAACTGCTGGGGCTGCAATAACATCACATATGGACATTGATGCGATAAGTTTTACGGGTTCAACAGAAACAGGTCGTCAAGTAATGAAGGCTGCAACTATGAGCAATTTGAAACCTGTTTCACTAGAATTAGGAGGCAAGTCACCAGTCTTAATTTTTGATGATGCTGATGTAGACAAAGCTGTTGAACTTGCTCTCTTTGGCATCCTACACAACAAGGGAGAAGTCTGTGTTGCATTTTCCAGAGTTTTTGTCCAGGAAGGGATTTATGATGAATTTGAGAAGAAGGTGGTGGAGAAGGCAAAAACTTGGGTAGTGGGGGACCCTTTTGATCCTAAAGTTCAACAAGGACCCCAAACTAGTAAGGCACAATTTGATAAAATCCTTTCATATATTGAGCATGGAAAGAATGAAGGAGCCACATTATTGACTGGGGGAAAGCCAGTTGGCAACAAGGGATACTACATTGAGCCTACTATTTTCTCCAATGTTAAGGAGGACATGCTAATAGCACAAGATGAAATATTTGGACCTGTGATGGCACTTTCTAAGTTCAAGACCATTGAGGAAGCAATTGAGAAAGCCAACAACACAAGATATGGCTTGGCAGCAGGGATTGTGACCAAGAACTTGGATATTGCTAACACTGTCTCAAGGTCCATCCGTGCAGGCATCATTTGGATCAACTGCTTCTTTGCCTTTGATATTGACTGTCCTTTTGGAGGATATAAGATGAGTGGATTTGGAAGAGATTATGGATTGGAAGCACTTCGAAAATATCTTCAAGTTAAATCTGTTGCAACTCCTATTTACAATTCTCCTTGGCTTTGA 1512 0.4259 MENLSNGHSHIDSFVQIPKVKFTKLFINGEFVDSVSGKTFETVDPRTEEVITEIAEATKEDVDIAVKAARKAFDSGPWPRMTGAERAKIMLKWAELIEQNLEEIAALDTIDGGKLHSWCKAVDVPEATNILRYYAGAADKIHGEVFKTSRDLHLYTLMEPIGVVGHIIPWNFPTIMFFAKASPALAAGCTMVLKPAEQTPLSSLFYAHLAKLAGIPDGVLNVLPGFGSTAGAAITSHMDIDAISFTGSTETGRQVMKAATMSNLKPVSLELGGKSPVLIFDDADVDKAVELALFGILHNKGEVCVAFSRVFVQEGIYDEFEKKVVEKAKTWVVGDPFDPKVQQGPQTSKAQFDKILSYIEHGKNEGATLLTGGKPVGNKGYYIEPTIFSNVKEDMLIAQDEIFGPVMALSKFKTIEEAIEKANNTRYGLAAGIVTKNLDIANTVSRSIRAGIIWINCFFAFDIDCPFGGYKMSGFGRDYGLEALRKYLQVKSVATPIYNSPWL* 504
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops5g00171 503 PANTHER ALDEHYDE DEHYDROGENASE-RELATED 16 494 - -
Rops5g00171 503 FunFam ALD5p Mitochondrial aldehyde dehydrogenase 27 292 - -
Rops5g00171 503 ProSitePatterns Aldehyde dehydrogenases glutamic acid active site. 269 276 IPR029510 GO:0016491
Rops5g00171 503 Pfam Aldehyde dehydrogenase family 31 493 IPR015590 GO:0016491
Rops5g00171 503 ProSitePatterns Aldehyde dehydrogenases cysteine active site. 297 308 IPR016160 GO:0016491
Rops5g00171 503 FunFam Aldehyde dehydrogenase3 273 462 - -
Rops5g00171 503 FunFam Aldehyde dehydrogenase, putative 465 491 - -
Rops5g00171 503 Gene3D Aldehyde Dehydrogenase; Chain A, domain 2 273 462 IPR016163 GO:0016620
Rops5g00171 503 SUPERFAMILY ALDH-like 16 499 IPR016161 GO:0016491
Rops5g00171 503 Gene3D Aldehyde Dehydrogenase; Chain A, domain 1 27 491 IPR016162 GO:0016491
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops5g00171 Rops-Chr5 2660273 2670939 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops5g00171 4 503 Aldehyde Dehydrogenase Gene Family AT3G24503 68.064 0.0 731
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops5g00171 K12355 - gmx:100784449 922.924
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops2g00266 2 4222950 4228700 Rops5g00171 5 2660273 2670939 PCT