Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops5g00168 ATGACCTTTGGTTTGATATTACACCGTGCAGCACTTGTTCACTTCCATTTTTCGAAAATTAACTGGATCCCGCGCACGCGCTTCTCCTCTACACGATTGCAACGTGAGAAAACTAGAAATCCATTTCCGAAGTGGATGAGTGTGATTGGGAGATCGATGCCGCGATCAAATTCGAACGTGCATCACCAGCGTCAGAGCTCCGATAACTTCCTCCTTGATGCAAATTATCAAGGAAGATGGTTTCATCCTTCAGCTTTCGCACAGGAGTTTGGAACTCGATCTTCGAGCTTGAGGAAGAACGACGATGATCGTGTTTTGACCAGTGGCTTGCTTGACTTGCATTCCTTCGATACTGAGCTTTTACCTGAGATATCTGATGTTAACAATGAATATTTGGTTCGGGGACAAAGTTTTGATGACTTTGAGCCTATCGGCAACAAACTTGCACAAAGGTCTCGGGGCTTGCCTGAGAGTCATGTACTTAGAAGTGTTCCAACAGATAAAGAGAGAGCGAACAATGTTGCCAAGATCAAAGTTGCGGTTCGGAAGAGACCACTAAATAAGAAGGAGATAGCGAAAAAAGAGGAAGATATTATTACCATAGATTCAAATTCTCTCACAGTTCATGAAAGAAAACTCAAGGTTGACTTAACAGAATATGTTGAGAAGCATGAGTTTGTTTTTGATGCTGTGCTGAATGAAGGTGTTTCAAATGATGAAGTGTATACTGAGACTGTGGAACCCATAGTTCCACTGATTTTCCAACGGATAAAAGCAACTTGCTTTGCATATGGCCAAACTGGCAGTGGGAAGACGTATACCATGCAACCATTGCCTCTCAAAGCTTCCCAAGATATTTTAAGATTAATGCACCACACGTACCGGAACCAAGGTTTCCAATTGTTTGTTAGTTTCTTCGAAATATACGGGGGGAAACTATATGATCTCCTCAATGATCGAAAAAAGCTTTGCATGAGGGAGGATGGGAAACAACAGGTTTGCATTGTTGGCTTGCAAGAATACAGAGTATATAAAGTTGAGACGATCAAGGAATTTATTGAGAAAGGAAATGCTGCAAGAAGTACTGGTACAACTGGTGCAAATGAGGAATCTTCTCGATCACATGCTATACTTCAGCTTTGTATCAAGCGGTCAGCTGATGGGACTGAATCAAAACCGGCTCGAGTTATTGGTAAACTATCTTTCATAGATCTGGCTGGAAGTGAACGTGGTGCCGATACTACAGATAATGATAAGCAGACTAGGATTGAAGGTGCTGAGATTAATAAAAGCTTACTTGCCCTGAAAGAATGCATTAGAGCACTAGACAATGACCAAGGGCATATCCCTTTCAGAGGAAGTAAATTGACTGAAGTTCTGCGAGACTCTTTTGTTGGTAATTCACGCACTGTAATGATATCTTGCATTTCACCAAGTTCAGGTTCATGTGAACATACTCTCAACACATTAAGATATGCTGACAGAGTGAAGGGCCTGTCAAAAGGGAATAATAGCTCCAGAAGGGATCCCCTTTCTTTCTCAAACCTTAGAGAATCAACTGTATTGCCTGGGTCTTCAGTTTTAACTCATGATGATACCTTTGAGGATGAAATAGCATATGTTTCCAGTGAGAGGAATCAATTTGGTTGGTCCAAAGGGCTTGAAAGAGAACCCTCTCCTCCAATCAATGTGGATTGTGTTCCAAGTGGTAGGATGGGGGGAAATTTGGCACACTCTCTGTATGCTGACCCACAAAAGGGTCAAAGAGGTAGTCAACATGACAGAGTTGACAATGAAAATCATTACCTAGGACTAACATATGAACAAGACAGAACAAGAAAATCAAGTAAGAGGGTGGATAACAACCAATCATCTGCTGTGGTGGACAAGAGGAGGATAGAATCTTGTGTTAAACATGTAGATTTATCATCACATGTTGAGACTAATCATTCTGATCCTGATGATGATTTAAACGCCCTGCTGAAGGAAGAGGAAGATCTTGTAACTGCTCACCGGAAACAGGTGGAGGAAACAATAGACATTGTTAGGGAGGAGATGAATTTACTCGTGGAAGCTGACCAACCAGGAAATCAACTGGATGATTATATTACCAAATTGAATACCATCTTGTCACAGAAGGCTGCAGGAATCTTTCAATTGCAGACTCAGTTGGCTCAGTTTCAGAGACGTTTAAATGAGTATAATGTTGTTGTACCTTCTGGTAACTGA 2229 0.4141 MTFGLILHRAALVHFHFSKINWIPRTRFSSTRLQREKTRNPFPKWMSVIGRSMPRSNSNVHHQRQSSDNFLLDANYQGRWFHPSAFAQEFGTRSSSLRKNDDDRVLTSGLLDLHSFDTELLPEISDVNNEYLVRGQSFDDFEPIGNKLAQRSRGLPESHVLRSVPTDKERANNVAKIKVAVRKRPLNKKEIAKKEEDIITIDSNSLTVHERKLKVDLTEYVEKHEFVFDAVLNEGVSNDEVYTETVEPIVPLIFQRIKATCFAYGQTGSGKTYTMQPLPLKASQDILRLMHHTYRNQGFQLFVSFFEIYGGKLYDLLNDRKKLCMREDGKQQVCIVGLQEYRVYKVETIKEFIEKGNAARSTGTTGANEESSRSHAILQLCIKRSADGTESKPARVIGKLSFIDLAGSERGADTTDNDKQTRIEGAEINKSLLALKECIRALDNDQGHIPFRGSKLTEVLRDSFVGNSRTVMISCISPSSGSCEHTLNTLRYADRVKGLSKGNNSSRRDPLSFSNLRESTVLPGSSVLTHDDTFEDEIAYVSSERNQFGWSKGLEREPSPPINVDCVPSGRMGGNLAHSLYADPQKGQRGSQHDRVDNENHYLGLTYEQDRTRKSSKRVDNNQSSAVVDKRRIESCVKHVDLSSHVETNHSDPDDDLNALLKEEEDLVTAHRKQVEETIDIVREEMNLLVEADQPGNQLDDYITKLNTILSQKAAGIFQLQTQLAQFQRRLNEYNVVVPSGN* 743
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops5g00168 742 Coils Coil 672 692 - -
Rops5g00168 742 FunFam Kinesin-like protein 158 502 - -
Rops5g00168 742 Pfam Kinesin motor domain 182 497 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Rops5g00168 742 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 173 498 IPR027417 -
Rops5g00168 742 PANTHER KINESIN-RELATED PROTEIN 6 68 736 IPR027640 GO:0003777|GO:0007018
Rops5g00168 742 ProSiteProfiles Kinesin motor domain profile. 176 499 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Rops5g00168 742 CDD KISc_KIF2_like 176 497 - -
Rops5g00168 742 PRINTS Kinesin heavy chain signature 256 277 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Rops5g00168 742 PRINTS Kinesin heavy chain signature 449 470 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Rops5g00168 742 PRINTS Kinesin heavy chain signature 365 382 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Rops5g00168 742 PRINTS Kinesin heavy chain signature 399 417 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Rops5g00168 742 SMART kinesin_4 174 505 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Rops5g00168 742 ProSitePatterns Kinesin motor domain signature. 398 409 IPR019821 GO:0003777|GO:0005524|GO:0007018
Rops5g00168 742 Gene3D Kinesin motor domain 157 501 IPR036961 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops5g00168 Rops-Chr5 2562322 2572752 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops5g00168 60 499 Calmodulin-binding Proteins AT5G65930 31.648 8.85e-44 169
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops5g00168 K10393 - gmx:100783382 1153.66