Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops5g00167 ATGGAGCAGAACAACGTGATCGCACCGTTCGTTGTGAAGACTTATCACATGGTGAATGATCCAACCACCGATAAGCTCATAACGTGGGGCCCAGCTAATAACAGCTTCATCGTCCTCGACCCTCTCGATTTCTCTCAATCCCTTCTCCCTGCTTTCTTCAAGCACAACAATTTCTCAAGCTTTGTCAGACAACTCAACACTTATGGTTTCAGAAAGGTGGATCCAGATCGATGGGAATTTGCGAACGAGTGGTTCCTTCGAGGGCAAAAGCATTTATTGAAGAACATAGTAAGAAGGAAGCAAGGTTATAGTGGTGGTGGAGGAAGAAACCATTATTCTCTTTTTCAGAAGCTTGATGAGTTTGACGATGAAGCCATGGTTATGGAGATTGCAAAGCTTAAGGAAGAACAAAAGGCTTTGGAGGAAGAGCTTCAAGGAATGAACAAAAGGTTAGAGACAACAGAAAAACGACCACAACAAATGATGGCTTTTCTATGCAATGTCGTAGAAAACCCTCAAGTTATTTCTAGGATACTTTTAGAAAGAGAGAAAAAACAGCTCGCGGAGAATAAGAAACGGCGGCTAATACCGCTGGAAACCTCCTCCTCCTCCTCCTCTGGCATGGCGGCGACTAATTCAGTCAAGGTAGAGTTTGATGAAGATGAACCAACCGTTGGTAATATTATATCTTCCTCGCCGGAGAATGGTTTTGAAATTGACAATTTCCGCCGTGATCCGCCGTTGTCTCCGCCGGAGGCTTGGTGGGGCAAGAGGCAAGGGATGGTGGTGGATGATTGGACTCGGATTGATCAACAAAATGGGTACGGTTATGATTGCGCCACCGTTTCACCGCCGTTGACGGTGGTGTCTCCGCCGTCTTCGGCGGCGATGGCTGGAGGCTATTTAGGGTTGGAGAATAGTGATAGTAAAGGGCGTGTGAGTATTTTTAGTGAAATGGCGGCGGAGAATAGTTCCCTGCCACCTTATCCGTTTTCACTTTTGGAAGGTGGCTTTTAG 1017 0.4621 MEQNNVIAPFVVKTYHMVNDPTTDKLITWGPANNSFIVLDPLDFSQSLLPAFFKHNNFSSFVRQLNTYGFRKVDPDRWEFANEWFLRGQKHLLKNIVRRKQGYSGGGGRNHYSLFQKLDEFDDEAMVMEIAKLKEEQKALEEELQGMNKRLETTEKRPQQMMAFLCNVVENPQVISRILLEREKKQLAENKKRRLIPLETSSSSSSGMAATNSVKVEFDEDEPTVGNIISSSPENGFEIDNFRRDPPLSPPEAWWGKRQGMVVDDWTRIDQQNGYGYDCATVSPPLTVVSPPSSAAMAGGYLGLENSDSKGRVSIFSEMAAENSSLPPYPFSLLEGGF* 339
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops5g00167 338 SMART hsfneu3 6 99 IPR000232 GO:0003700|GO:0006355|GO:0043565
Rops5g00167 338 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 7 205 IPR027725 -
Rops5g00167 338 SUPERFAMILY "Winged helix" DNA-binding domain 7 99 IPR036390 -
Rops5g00167 338 Gene3D - 2 100 IPR036388 -
Rops5g00167 338 FunFam Heat stress transcription factor B-4 2 100 - -
Rops5g00167 338 ProSitePatterns HSF-type DNA-binding domain signature. 49 73 IPR000232 GO:0003700|GO:0006355|GO:0043565
Rops5g00167 338 Pfam HSF-type DNA-binding 10 99 IPR000232 GO:0003700|GO:0006355|GO:0043565
Rops5g00167 338 Coils Coil 123 157 - -
Rops5g00167 338 PRINTS Heat shock factor (HSF) domain signature 48 60 IPR000232 GO:0003700|GO:0006355|GO:0043565
Rops5g00167 338 PRINTS Heat shock factor (HSF) domain signature 10 33 IPR000232 GO:0003700|GO:0006355|GO:0043565
Rops5g00167 338 PRINTS Heat shock factor (HSF) domain signature 61 73 IPR000232 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops5g00167 Rops-Chr5 2548574 2550129 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops5g00167 6 203 HSF AT3G24520 62.687 1.03e-84 257
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Rops5g00167 HSF_DNA-bind 1.7e-30 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops5g00167 K09419 - gmx:100794896 404.831
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops5g00167 5 2548574 2550129 Rops5g00167 5 2548574 2550129 ECH