Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops5g00156 ATGGGGGAAGGTGAAGAAGGGAGTGATTGTGCTCCCAATAATAATGTGGCGTCTTCATCGGAAGTTGTTGTTTCAACAGCGTCGTTTGATGCTCCGGCGAAGAAGCTCGCCAGGCAGCTCGATTTCACCACCGTGCCGGAACAATCGCAATCGCAATTGCAGACGGTGATGAAGCAGCAACCAGTGACGGTGTTGCCGGTGCCGCCACAAGCTCCTCCTCACCCTTCTTCGGTGAGGGTTGGGAAACCAGAATCTCCAAAATCAAGATCAAGACCTAACTTTGAAATGAAAGAAGCTACTCCCAAGAAGCAAAAGCAGTGCAATTGTAAACACTCTAAATGCTTAAAACTATATTGTGAATGTTTTGCATCGGGAATATATTGTGAGGGTTGCAACTGTGTAAATTGTTTCAACAATGTTGAAAATGAAGCTGCTAGACGAGAGGCTGTTGAAGCTACTTTAGAGCGCAATCCAAATGCATTTAGGCCCAAAATTGCAAGCAGTCCTCATGGAACACGTGATAGCAGGGAGGAGGCTGGGGAAGGTTTGATATTAGGAAAACATAACAAGGGGTGCCATTGTAAAAAATCTGGGTGCCTTAAGAAGTACTGTGAATGCTTCCAAGCCAACATTCTTTGTTCTGAAAATTGTAAATGCATGGACTGCAAGAATTTTGAAGGAAGTGAAGAGAGACAGGCTTTGTTTCATGGAGATCAAAATAACATGACAATGACATATATTCAGCAAGCGGCAAATGCTGCCATAACTGGGGCTGTTGGTGCCTCTGGCTATTCATCGCCTCCAGTATCCAAGAAAAGAAAAGGTCAGGAACTCTTCTTTTGGCCTACAGCCAAGGATCCATCAAATAACAAGTTGGGACAACAGGTAAACCATGTCAGAAGTCCAGCACCCTCCTCATCCATGTCACCTGTCCCAGGTGCTCGTGTTGGAACTGCAACATTAGGTCCTTCAAAATTTATGTACAGGTCTCTTTTAGCGGACATTATACAACCACAGCACCTCAAGGAGCTTTGCTCAGTTCTGGTGCTAGTATCTGGACAAGCTGCAAAGACACATGCAGACCAGAAAATTTTAACGGAAAGGTATACAGAAGATCAGATGGAAACGTCCCATGCTTCTTCATCTCAAGAGCGATTACCAAGTCAAAAGGAAGGTGATGTTGAGAAGGCTACAGCTGATGATTGTTCGAGTGCAAACCAAACAGATAAAACCAGCCCAGATAATTCCTGTTCAGATGGCGCTGATGTCCTGAAAGGGAGGCCAATGTCTCCTGGGACTTTAGCCTTGATGTGTGATGAGCAAGATACAATGTTCATGACAGCGGCCTCTCCTGTTGGGCCAATGGCCCATGCTTGCAATACATCTTCACAATTTCCTTATGGACAAGGAATGACAGAGGTTTATGCTGAGCAAGAAAGGATTGTATTAACAAAGTTTAGAGATTTTCTCAACAGGGTTATCACTATGGGAGAAATAAACGAAACAAAATGCTCTTCATTGACTAGAAGTGAATTAGAGAGTCAAAAGGATCCCATCAACCATGGCCTTGGAAATGCCGGTACTGAAATAGTGCATCAGCAGGAAGCCACTAGCAATGGTGCTACCAAAGCTCTTGTTCCACCCCTAGCCACAACGTCAGCATCTATGATCCCTGGTAATATTGTTACTGAAAATGGGGAAACGAAGCTGAAAATTGAAAAAGAGATATGA 1731 0.4419 MGEGEEGSDCAPNNNVASSSEVVVSTASFDAPAKKLARQLDFTTVPEQSQSQLQTVMKQQPVTVLPVPPQAPPHPSSVRVGKPESPKSRSRPNFEMKEATPKKQKQCNCKHSKCLKLYCECFASGIYCEGCNCVNCFNNVENEAARREAVEATLERNPNAFRPKIASSPHGTRDSREEAGEGLILGKHNKGCHCKKSGCLKKYCECFQANILCSENCKCMDCKNFEGSEERQALFHGDQNNMTMTYIQQAANAAITGAVGASGYSSPPVSKKRKGQELFFWPTAKDPSNNKLGQQVNHVRSPAPSSSMSPVPGARVGTATLGPSKFMYRSLLADIIQPQHLKELCSVLVLVSGQAAKTHADQKILTERYTEDQMETSHASSSQERLPSQKEGDVEKATADDCSSANQTDKTSPDNSCSDGADVLKGRPMSPGTLALMCDEQDTMFMTAASPVGPMAHACNTSSQFPYGQGMTEVYAEQERIVLTKFRDFLNRVITMGEINETKCSSLTRSELESQKDPINHGLGNAGTEIVHQQEATSNGATKALVPPLATTSASMIPGNIVTENGETKLKIEKEI* 577
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops5g00156 576 PANTHER TESMIN/TSO1-RELATED 34 499 IPR028307 -
Rops5g00156 576 SMART CXC_2 187 228 IPR033467 -
Rops5g00156 576 SMART CXC_2 102 142 IPR033467 -
Rops5g00156 576 MobiDBLite consensus disorder prediction 400 418 - -
Rops5g00156 576 MobiDBLite consensus disorder prediction 290 316 - -
Rops5g00156 576 Pfam Tesmin/TSO1-like CXC domain, cysteine-rich domain 104 139 IPR005172 -
Rops5g00156 576 Pfam Tesmin/TSO1-like CXC domain, cysteine-rich domain 190 224 IPR005172 -
Rops5g00156 576 MobiDBLite consensus disorder prediction 67 97 - -
Rops5g00156 576 MobiDBLite consensus disorder prediction 368 425 - -
Rops5g00156 576 MobiDBLite consensus disorder prediction 290 313 - -
Rops5g00156 576 ProSiteProfiles CRC domain profile. 103 227 IPR005172 -
Rops5g00156 576 MobiDBLite consensus disorder prediction 1 24 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops5g00156 Rops-Chr5 2395486 2403960 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops5g00156 32 543 CPP Transcription Factor Family AT4G29000 55.054 0.0 548
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF CPP Rops5g00156 TCR 3e-12 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops5g00156 - - gmx:100818116 879.011