Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops5g00145 ATGGATCCTCCAACTAAGAGCTGGACCATCCATACCCGATCCGACTTAACTGAGAAATACGAGGTTCTTGAACGGGTCGGGTCGGGTTCCTACTCCACCGTCTACCGTGGCCGGCGACTCTCCGACGGAGCCACGGTGGCGCTGAAGGAAGTTCACGACAACCAATCGGCGCTCCGTGAAATCGAAGCATTGCGGTTCCTTCGGGGCTCCGAAAACGTCGTCGTTTTGCACGAGTTCTTCATGCGTGAGGATGAAGATCCTGTGCTCGTTCTCGAGTTTCTGAGGACCGACCTCGCCACCGTGATTAGGGAAGCCGGCGTCGGTGACGGTGGTGGTGGGGGTCTTGCTGTTGGGGAGGTTAAGAGGTGGATGATGCAGGTTCTAAGTGGGGTCCACGTGTGTCACAGGAATATGATCGTGCATAGAGACTTGAAGCCTGGGAATTTTTTGGTTTCAGATGATGGGGTTCTCAAGTTAGCAGATTTTGGACAGGCAAGGATATTTATGCAGCCTGGATTTGATGCTACAGAGGATAACCCATCACCATATGAGCTTGATGCTTCAAATGCTGAAAGTTCACTCCAAAATCTTGATGCTATTCCCCTGTCAGAAGAGGAAATTGTGAGTCATGAGGAATATTTTAGAGTTTTAGATGAGATGAAAACTAAGACCTACACATATGACACTGATAAGGATGCAAGCATCCATGATGGTAACACCTCTTGCCTTGCAACATGCACCACAAGTGACGTAGATGATGATCTTTGGAAGGGGGCTTCTTTAACAGATGAGGCAAAGGAGGAGGGAGGGAATGAACTTGGTTGTCTCACATCATGTGTTGGAACTAGATGGTTCAGGGCTCCTGAACTACTTTATGGATCCACTGATTATGGTTTAGAGGTTGATCTATGGTCCTTGGGATGTGTCTTTGCTGAGCTCTTAACACTGAAGCCCTTGTTTCCTGGAACATCTGATATAGATCAGCTCAGCAAAATTATCAGTGTTTTGGGTAACCTCAATGAGGAAGCTTGGCCTGGTTGTTCCAAACTTCCTCCTGATTATGGAACAATCTCATTTAGTAAGGTGGAAAACCCTATTGGTCTTGAAGCTTGCATGCCTAACAGCTCACCTGATGAAGTTTCCATGGTGAAAAGATTGGTTTGTTATGATCCAGCTAGCAGAGCCACAGCAATGGAGTTACTTGGTGATTCGTACTTCAGTGAAGAACCTCTTCCTGTTCCTATTACTGATCTGTGGGTTCCTTTGACCAAAAATGGACAAGACCAGGATTCCCCTGGTGGGTTTCATGGTTACAACGAAATGGGTTCTGATTCTGATATTGAGGACTCTGGTGCTATGAATATCACCACCACCGCCCCTTAA 1383 0.4714 MDPPTKSWTIHTRSDLTEKYEVLERVGSGSYSTVYRGRRLSDGATVALKEVHDNQSALREIEALRFLRGSENVVVLHEFFMREDEDPVLVLEFLRTDLATVIREAGVGDGGGGGLAVGEVKRWMMQVLSGVHVCHRNMIVHRDLKPGNFLVSDDGVLKLADFGQARIFMQPGFDATEDNPSPYELDASNAESSLQNLDAIPLSEEEIVSHEEYFRVLDEMKTKTYTYDTDKDASIHDGNTSCLATCTTSDVDDDLWKGASLTDEAKEEGGNELGCLTSCVGTRWFRAPELLYGSTDYGLEVDLWSLGCVFAELLTLKPLFPGTSDIDQLSKIISVLGNLNEEAWPGCSKLPPDYGTISFSKVENPIGLEACMPNSSPDEVSMVKRLVCYDPASRATAMELLGDSYFSEEPLPVPITDLWVPLTKNGQDQDSPGGFHGYNEMGSDSDIEDSGAMNITTTAP* 461
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops5g00145 460 MobiDBLite consensus disorder prediction 423 460 - -
Rops5g00145 460 Pfam Protein kinase domain 20 170 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops5g00145 460 Pfam Protein kinase domain 272 406 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops5g00145 460 Gene3D Phosphorylase Kinase; domain 1 11 107 - -
Rops5g00145 460 SUPERFAMILY Protein kinase-like (PK-like) 12 412 IPR011009 -
Rops5g00145 460 ProSiteProfiles Protein kinase domain profile. 20 406 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops5g00145 460 Gene3D Transferase(Phosphotransferase) domain 1 110 412 - -
Rops5g00145 460 SMART serkin_6 20 406 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops5g00145 460 ProSitePatterns Protein kinases ATP-binding region signature. 26 49 IPR017441 GO:0005524
Rops5g00145 460 ProSitePatterns Serine/Threonine protein kinases active-site signature. 139 151 IPR008271 GO:0004672|GO:0006468
Rops5g00145 460 FunFam Cyclin-dependent kinase F-1 11 105 - -
Rops5g00145 460 PANTHER CELL DIVISION PROTEIN KINASE 18 412 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops5g00145 Rops-Chr5 2316175 2318220 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops5g00145 4 459 Core Cell Cycle Gene Families AT4G28980 59.149 0.0 565
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CDK-CCRK Rops5g00145 Pkinase 8.9e-31 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops5g00145 - - gmx:548056 684.871
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops5g00145 5 2316175 2318220 Rops5g00145 5 2316175 2318220 ECH